Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_J23
(607 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukary... 321 9e-87
UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; ... 230 2e-59
UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4... 220 2e-56
UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Olig... 188 7e-47
UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Tr... 181 1e-44
UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole geno... 172 6e-42
UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephal... 150 3e-35
UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genom... 142 6e-33
UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lambl... 127 2e-28
UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarc... 124 2e-27
UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarc... 112 5e-24
UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea... 110 2e-23
UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; ... 109 7e-23
UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methano... 108 9e-23
UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobac... 106 5e-22
UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1; Ostreo... 103 3e-21
UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methano... 103 4e-21
UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermof... 101 1e-20
UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methano... 101 1e-20
UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeo... 101 1e-20
UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 95 9e-19
UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S riboso... 94 2e-18
UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolo... 94 3e-18
UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1; ... 88 2e-16
UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphyl... 87 4e-16
UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6; Pyrobac... 85 2e-15
UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermop... 81 2e-14
UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 79 1e-13
UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivi... 77 4e-13
UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmenta... 76 6e-13
UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genom... 69 7e-11
UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole gen... 66 6e-10
UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1; ... 66 6e-10
UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces cap... 65 1e-09
UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2; Nanoarc... 57 4e-07
UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2; Deinococ... 56 9e-07
UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zin... 55 2e-06
UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1; ... 53 5e-06
UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella... 53 6e-06
UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3; Planctom... 48 2e-04
UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197; Bacter... 48 2e-04
UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9; Mycoplas... 47 3e-04
UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19; Bactero... 46 5e-04
UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponem... 46 7e-04
UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellula... 46 0.001
UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobact... 45 0.001
UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5; Thermoto... 44 0.002
UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94; Bacteri... 43 0.006
UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10; Chlorob... 43 0.006
UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27; Bacteri... 42 0.011
UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1; ... 42 0.015
UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39; Bacteri... 41 0.020
UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n... 41 0.026
UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18; Bacteri... 40 0.060
UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4; Leptospi... 39 0.080
UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococc... 38 0.14
UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplas... 37 0.32
UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n... 37 0.32
UniRef50_A0MNG0 Cluster: Putative uncharacterized protein; n=1; ... 36 0.74
UniRef50_Q52188 Cluster: TraC precursor; n=9; root|Rep: TraC pre... 36 0.98
UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1; ... 36 0.98
UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3; n... 35 1.3
UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellul... 35 1.7
UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;... 34 2.3
UniRef50_Q5CD89 Cluster: Outer membrane protein; n=8; Histophilu... 33 4.0
UniRef50_Q2RZ88 Cluster: Putative uncharacterized protein; n=1; ... 33 5.2
UniRef50_Q6FX91 Cluster: Candida glabrata strain CBS138 chromoso... 33 5.2
UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8; Euteleos... 33 6.9
UniRef50_Q0D5D7 Cluster: Os07g0567500 protein; n=5; Magnoliophyt... 32 9.2
UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1; ... 32 9.2
UniRef50_Q225J0 Cluster: Putative uncharacterized protein; n=1; ... 32 9.2
>UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174;
Eukaryota|Rep: 40S ribosomal protein S3 - Homo sapiens
(Human)
Length = 243
Score = 321 bits (788), Expect = 9e-87
Identities = 161/185 (87%), Positives = 169/185 (91%)
Frame = +3
Query: 51 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 230
MAV ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VL
Sbjct: 1 MAVQ-ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVL 59
Query: 231 GEKGRRIRELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRAC 410
GEKGRRIRELT+V QKRF P SV LYAEKVATRGLCAIAQAESLRYKL+GGLAVRRAC
Sbjct: 60 GEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRAC 119
Query: 411 YGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLRQ 590
YGVLRFIMESGA+GCEVVVSGKLRGQRAKSMKFV GLMIHSGDP N YV+TA RHVLLRQ
Sbjct: 120 YGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQ 179
Query: 591 XVLRI 605
VL I
Sbjct: 180 GVLGI 184
>UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3;
n=4; Saccharomycetales|Rep: Likely cytosolic ribosomal
protein S3 - Candida albicans (Yeast)
Length = 251
Score = 230 bits (563), Expect = 2e-59
Identities = 110/180 (61%), Positives = 136/180 (75%)
Frame = +3
Query: 66 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 245
+SKK+K V DGVF AELNEF TRELAE GY+GVEVR TP + E+I+ A+ TQ VLGE+GR
Sbjct: 6 LSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQGR 65
Query: 246 RIRELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 425
RI ELTS+ KRF + + + +YAE+V RGL A QAE+L+ KL+ GL +RRA YGVLR
Sbjct: 66 RIHELTSLIVKRFKLSPEGIAIYAERVEERGLSAAVQAEALKAKLLSGLPIRRAAYGVLR 125
Query: 426 FIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLRQXVLRI 605
F M +GA+G EVV+SGKLR RAKS K+ G MIHSG P D+++ A RHVL+RQ VL I
Sbjct: 126 FAMGAGAKGVEVVISGKLRAARAKSQKYADGFMIHSGQPTRDFIDIAIRHVLMRQGVLGI 185
>UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4;
Trypanosoma|Rep: 40S ribosomal protein S3, putative -
Trypanosoma brucei
Length = 266
Score = 220 bits (537), Expect = 2e-56
Identities = 107/180 (59%), Positives = 136/180 (75%)
Frame = +3
Query: 66 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 245
+SKKR V DGVF AEL EFL RELA+DG++GVE RVTP R+EI+I +T+T+ VLGEKGR
Sbjct: 56 LSKKRMMVRDGVFYAELFEFLKRELADDGFAGVEHRVTPTRTEIVIRSTKTREVLGEKGR 115
Query: 246 RIRELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 425
RIRELT+ Q+RFN + L+AE+V RGL A+AQAESLR+KL+ L VRRA G++R
Sbjct: 116 RIRELTACLQQRFNYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIR 175
Query: 426 FIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLRQXVLRI 605
++MESGA+GCEV + GK++GQRAKSM F G MI SG +V+TATRH LR + +
Sbjct: 176 YVMESGAKGCEVTIGGKIKGQRAKSMTFRDGYMIKSGTAHKHFVDTATRHCHLRAGTIGV 235
>UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3;
Oligohymenophorea|Rep: KH domain containing protein -
Tetrahymena thermophila SB210
Length = 253
Score = 188 bits (459), Expect = 7e-47
Identities = 83/180 (46%), Positives = 127/180 (70%)
Frame = +3
Query: 66 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 245
I+KK+KFV DGVF AEL+ F ++ L + GY+G+EVR TP ++EI I AT+ Q V+G +G+
Sbjct: 18 INKKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGK 77
Query: 246 RIRELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 425
+ +ELT QKRF + ++AE + +GLCA AQ E++ YKL+ + VR A +++
Sbjct: 78 KHKELTQFLQKRFGYSDDQIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIK 137
Query: 426 FIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLRQXVLRI 605
+++ GA+GCE+++SGKL+ QRAK+MKF G MI +G P NDY++ A RHV +Q ++ +
Sbjct: 138 SVIQDGAKGCEIIISGKLKQQRAKTMKFKQGYMICTGQPKNDYIDVAVRHVFFKQGIMGV 197
>UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3,
putative - Trichomonas vaginalis G3
Length = 216
Score = 181 bits (441), Expect = 1e-44
Identities = 83/185 (44%), Positives = 121/185 (65%)
Frame = +3
Query: 51 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 230
M +K R+ + G+F AELNE LTREL ++GY G EVR TP R+EIII A T+ +
Sbjct: 1 MKAQRCTKVRRIIETGLFYAELNELLTRELTKEGYGGCEVRQTPTRTEIIIKAANTKEFV 60
Query: 231 GEKGRRIRELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRAC 410
GRR++E+ + QKR+ + S+ ++ +++ +GL A+ Q ESLRYKLI + RRA
Sbjct: 61 DNHGRRLQEVRMMIQKRWRLKEDSLEIFIDRIQRKGLSALNQLESLRYKLIARIPARRAA 120
Query: 411 YGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLRQ 590
Y ++RF+M++GARGCEV +SGKLRG RA + K+ G M+ SGD +V A H+ ++Q
Sbjct: 121 YSIIRFVMDAGARGCEVAISGKLRGARASTSKYKEGYMVKSGDVTKQFVTQAVGHIPMKQ 180
Query: 591 XVLRI 605
+ I
Sbjct: 181 ATIGI 185
>UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 617
Score = 172 bits (418), Expect = 6e-42
Identities = 105/183 (57%), Positives = 119/183 (65%)
Frame = +3
Query: 57 VNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 236
V +SKKRKF DGVF A LNE LTREL E+GYSG EVRVTP+ +EIII AT+T +VLGE
Sbjct: 2 VTQMSKKRKFAVDGVFFAGLNEVLTRELVENGYSGDEVRVTPMCTEIIIRATQTHNVLGE 61
Query: 237 KGRRIRELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYG 416
KG++I+ELTSV QKRF SV L AEKV RG AIAQAESLRYKL+GGLA+
Sbjct: 62 KGKKIKELTSVVQKRFEFLENSVELCAEKVNNRGFYAIAQAESLRYKLLGGLAM------ 115
Query: 417 VLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLRQXV 596
L QRAKSMKF G +I SG P DY++ A RHV LRQ V
Sbjct: 116 --------------------LCAQRAKSMKFKDGYLISSGQPVKDYIDLAVRHV-LRQGV 154
Query: 597 LRI 605
L I
Sbjct: 155 LGI 157
>UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S3 -
Encephalitozoon cuniculi
Length = 228
Score = 150 bits (363), Expect = 3e-35
Identities = 70/175 (40%), Positives = 110/175 (62%)
Frame = +3
Query: 81 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 260
+F+ +G+ AEL EF + L +G+S +E+R+ +II+ + +GEK R+R+
Sbjct: 21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQF 80
Query: 261 TSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 440
+ +R +P +SV + EKV +GLCA+ QA +R K++GG+ RRA L+ +
Sbjct: 81 QHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHA 140
Query: 441 GARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLRQXVLRI 605
A+GC+++VSGKL+GQRAKS+KF G++IHSGD DY+NT V +Q V+ I
Sbjct: 141 KAQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGI 195
>UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 142 bits (344), Expect = 6e-33
Identities = 79/138 (57%), Positives = 93/138 (67%)
Frame = +3
Query: 192 EIIIMATRTQSVLGEKGRRIRELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLR 371
EIII AT+TQ+VLG+KGR+IRELTSV QKRF +V LYAEK R AIAQAESLR
Sbjct: 101 EIIIHATQTQNVLGKKGRKIRELTSVVQKRFEFLENNVELYAEKFNNRVFYAIAQAESLR 160
Query: 372 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCND 551
+KL+GGL VRRA YGVL F+MESG +GCEV + +I SG P D
Sbjct: 161 FKLLGGLVVRRAGYGVLSFVMESGTKGCEV----------------IGWYIISSGQPVKD 204
Query: 552 YVNTATRHVLLRQXVLRI 605
Y+N+ RHVLL+Q VL I
Sbjct: 205 YINSVVRHVLLKQGVLSI 222
>UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_157_11435_12088 - Giardia lamblia
ATCC 50803
Length = 217
Score = 127 bits (306), Expect = 2e-28
Identities = 62/175 (35%), Positives = 104/175 (59%)
Frame = +3
Query: 81 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 260
K++ D + +AEL+EF +REL + GY+ + T +II + V+G+ R+ ++
Sbjct: 16 KYLNDCIMEAELHEFFSRELVDAGYASCSLCRTIDSICVIIQCAEPEVVMGDNHYRLHKI 75
Query: 261 TSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 440
+ RF ++ ++ +K+ RGL A ++LR KL + +RRA Y ++R M +
Sbjct: 76 EYLLAGRFMCDPKNFNIWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSIIRTAMRA 135
Query: 441 GARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLRQXVLRI 605
GA GCEV+V+GKLR QRA++ KF G +I +G P ++ ATRH+ +RQ V+ +
Sbjct: 136 GAAGCEVIVAGKLRAQRARANKFKEGCLISTGHPKRIFLAEATRHIKMRQGVIGV 190
>UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Pyrococcus furiosus
Length = 210
Score = 124 bits (299), Expect = 2e-27
Identities = 66/177 (37%), Positives = 103/177 (58%)
Frame = +3
Query: 75 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 254
+R F+ + V + ++EFL +EL GY G++++ TP+ +++II A V+G GRRIR
Sbjct: 4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 255 ELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 434
ELT + +K+F + + + E++ L A QA L L G+ RRA Y LR IM
Sbjct: 64 ELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIM 121
Query: 435 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLRQXVLRI 605
+GARG E+ +SGKL G+RAKS++F G + G+P V+ LL+ V+ +
Sbjct: 122 NNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGV 178
>UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Methanosarcina acetivorans
Length = 318
Score = 112 bits (270), Expect = 5e-24
Identities = 58/162 (35%), Positives = 96/162 (59%)
Frame = +3
Query: 75 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 254
++KFV DG KA ++E+ +L+ GY G+E+ TP+ ++I+I + + V+G+ G+ IR
Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIR 63
Query: 255 ELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 434
+LT ++++ + A++V L A A L + G R+A + LR +M
Sbjct: 64 KLTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVM 121
Query: 435 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVN 560
+GA GCEVV+SGKL G R++ KFV G + HSG+P + V+
Sbjct: 122 NAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVD 163
>UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4;
Archaea|Rep: 30S ribosomal protein S3P - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 234
Score = 110 bits (265), Expect = 2e-23
Identities = 58/161 (36%), Positives = 92/161 (57%)
Frame = +3
Query: 75 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 254
++KF+ DGV + +FLT+EL GY G+++ TP+ +++ I A + V+G+ G+++R
Sbjct: 4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVR 63
Query: 255 ELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 434
+LT ++I V + ++V A AE L L G R+A +R IM
Sbjct: 64 QLTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIM 121
Query: 435 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYV 557
ESGA GCEV+V+GKL G R+++ KF G + H G+P V
Sbjct: 122 ESGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIV 162
>UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S3P - Ignicoccus hospitalis KIN4/I
Length = 241
Score = 109 bits (261), Expect = 7e-23
Identities = 65/182 (35%), Positives = 103/182 (56%)
Frame = +3
Query: 51 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 230
M+V + K+ F+ + + +++E+L + GYS VE++ TP+ + +II A R+ +++
Sbjct: 1 MSVAKKNIKKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAII 60
Query: 231 GEKGRRIRELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRAC 410
G +G+ I+++T V ++ F IP V + KV L A A L L G RRA
Sbjct: 61 GRRGQTIKQITKVLEEWFGIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAA 118
Query: 411 YGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLRQ 590
Y LR IM +GA G +V VSGKLRG+RA+ K++ G + SG+ + A HVLL+
Sbjct: 119 YTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLKV 178
Query: 591 XV 596
V
Sbjct: 179 GV 180
>UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3P -
Methanopyrus kandleri
Length = 227
Score = 108 bits (260), Expect = 9e-23
Identities = 59/170 (34%), Positives = 96/170 (56%)
Frame = +3
Query: 48 IMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 227
+M N+ +KFV G+ K EL+E+L EL GY G+ ++ P ++II R
Sbjct: 2 VMYGENVPVHKKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIA 61
Query: 228 LGEKGRRIRELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 407
+G +GR IR + Q+RF + + V + +++ + L A L L G+ RRA
Sbjct: 62 IGRRGRNIRRVEEEVQERFPLLGR-VSIEVKELPSPELNPRVVARRLASALERGIHFRRA 120
Query: 408 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYV 557
YG LR IM +GA+G +++SGKL G RA++ KF+ G + + G+P ++Y+
Sbjct: 121 AYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYM 170
>UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S3P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 304
Score = 106 bits (254), Expect = 5e-22
Identities = 55/166 (33%), Positives = 100/166 (60%)
Frame = +3
Query: 66 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 245
++ +++F+ DG+ + +++EF EL GY G++V TP+ ++I++ A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 246 RIRELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 425
IR++T+ + RFN+ V + ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 426 FIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNT 563
IMESGA G E+V+SGK+ G R++ KF G + H+G+P + V++
Sbjct: 119 RIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDS 164
>UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1;
Ostreococcus tauri|Rep: Putative ribosomal protein -
Ostreococcus tauri
Length = 145
Score = 103 bits (247), Expect = 3e-21
Identities = 48/68 (70%), Positives = 55/68 (80%)
Frame = +3
Query: 396 VRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRH 575
VR ACYGVLR+IMESGA+G EVVVSGKLRGQRAK+MKF G MI SG+P DY+ + TRH
Sbjct: 30 VRSACYGVLRYIMESGAKGAEVVVSGKLRGQRAKAMKFKDGYMISSGNPVRDYIVSCTRH 89
Query: 576 VLLRQXVL 599
LLRQ +
Sbjct: 90 ALLRQGTI 97
>UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S3P -
Methanobacterium thermoautotrophicum
Length = 258
Score = 103 bits (246), Expect = 4e-21
Identities = 55/177 (31%), Positives = 97/177 (54%)
Frame = +3
Query: 75 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 254
++ FV +G+ + ++E+L +EL GY G++V+VTP+ + +++ A R V+G G+ +R
Sbjct: 3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVR 62
Query: 255 ELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 434
+T + +F++ V + ++V L A + L G+ RR Y +R IM
Sbjct: 63 AITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIM 120
Query: 435 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLRQXVLRI 605
+GA+G EV +SGK+RG R+ + KF G + G+P +V V L+ VL +
Sbjct: 121 AAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGV 177
>UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein S3P
- Thermofilum pendens (strain Hrk 5)
Length = 202
Score = 101 bits (242), Expect = 1e-20
Identities = 59/170 (34%), Positives = 90/170 (52%)
Frame = +3
Query: 78 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 257
RK + G+ LNE+L R+L Y + TPI +++I+ A V+G KG I+
Sbjct: 6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKA 65
Query: 258 LTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 437
+ V ++ F I + + +V + L A A + L+ G+ RRA L IM
Sbjct: 66 IAEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMA 123
Query: 438 SGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLR 587
+GARG E+V+SGKL QR ++ KF G + SG+P + V+ A HVLL+
Sbjct: 124 AGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLK 173
>UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5;
Methanococcus|Rep: 30S ribosomal protein S3P -
Methanococcus maripaludis
Length = 211
Score = 101 bits (242), Expect = 1e-20
Identities = 50/177 (28%), Positives = 95/177 (53%)
Frame = +3
Query: 75 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 254
+R FVG+ V + ++E+ +L GYS ++ + TPI + I + A + V+G KG+ ++
Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVK 62
Query: 255 ELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 434
ELT +++ + + ++V L + L G+ R+ + +R +M
Sbjct: 63 ELTETLATEYSVKNPQIEV--KQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVM 120
Query: 435 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLRQXVLRI 605
SGA+G ++VSGKL G+R+++ KF+ G M H G+P VN + + L+ ++ +
Sbjct: 121 GSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGIVGV 177
>UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3P -
Archaeoglobus fulgidus
Length = 229
Score = 101 bits (242), Expect = 1e-20
Identities = 59/161 (36%), Positives = 90/161 (55%)
Frame = +3
Query: 75 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 254
+RKFV + + K + E++ E+ G+ GV++ TP+ +++ + R V+G+ GRRI+
Sbjct: 4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIK 63
Query: 255 ELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 434
LT K F I V + ++V A A L L G RRA Y L IM
Sbjct: 64 ALTEKL-KDFGIENPQVSV--DEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIM 120
Query: 435 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYV 557
E+GA+GCE+ +SGKL +RA++ KFV G ++H+GDP V
Sbjct: 121 EAGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDPAESMV 161
>UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P - Sulfolobus
solfataricus
Length = 229
Score = 95.5 bits (227), Expect = 9e-19
Identities = 54/177 (30%), Positives = 90/177 (50%)
Frame = +3
Query: 75 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 254
KR F+ + K +++E+L ++ Y+GVEV TPI + +II A R ++G GR I+
Sbjct: 5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIK 64
Query: 255 ELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 434
+L + +K F + + + V L A A L L G RRA + +R IM
Sbjct: 65 QLAQIFEKVFGLENPQITI--TNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIM 122
Query: 435 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLRQXVLRI 605
+GA G E+++SGKL +RA+ K G++ SG ++ A +L+ + +
Sbjct: 123 NAGALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLKPGIFGV 179
>UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S ribosomal
protein S3; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S3 - Canis familiaris
Length = 161
Score = 94.3 bits (224), Expect = 2e-18
Identities = 45/57 (78%), Positives = 51/57 (89%)
Frame = +3
Query: 69 SKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 239
SKKR+FV DG+F+AELNEFLTRELAEDG S VEVRVTP + EIII+ TRTQ+VLGEK
Sbjct: 6 SKKRQFVADGIFRAELNEFLTRELAEDGDSRVEVRVTPTKPEIIILTTRTQNVLGEK 62
Score = 75.8 bits (178), Expect = 8e-13
Identities = 37/57 (64%), Positives = 43/57 (75%)
Frame = +3
Query: 429 IMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLRQXVL 599
+ ESGA+G E +VSGKL+GQRAKS KFV MIHS D N YV+T+ HVLLRQ VL
Sbjct: 80 VQESGAKGYEAMVSGKLQGQRAKSAKFVDDSMIHSRDCVNHYVDTSVHHVLLRQGVL 136
>UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3;
Sulfolobaceae|Rep: 30S ribosomal protein S3P -
Sulfolobus acidocaldarius
Length = 231
Score = 93.9 bits (223), Expect = 3e-18
Identities = 58/174 (33%), Positives = 88/174 (50%)
Frame = +3
Query: 75 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 254
KR F+ K ++E+L ++ Y+GVE+ TPI + +II A R ++G+ G+ I+
Sbjct: 5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIK 64
Query: 255 ELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 434
+L V +K F + + + A + L A A L L G RRA + +R IM
Sbjct: 65 QLAQVLEKFFGLENPQITVTAAE--NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIM 122
Query: 435 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLRQXV 596
SGA G EV+VSGKL +RAK K G + SG ++ A +L+ V
Sbjct: 123 SSGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLKPGV 176
>UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 278
Score = 87.8 bits (208), Expect = 2e-16
Identities = 51/178 (28%), Positives = 92/178 (51%)
Frame = -3
Query: 605 DS*YSLPEKHMSGSSVDVVIARVSRVDHESXYKLH*FGTLTTQLARYNNFTTTGARFHDE 426
D+ +L +H+S +V+ V+ ++RVDHE+ L G+ ++Q +N T H +
Sbjct: 87 DTQNTLSHQHVSDGNVNKVVGWLTRVDHETVRVLLRLGSSSSQFTGDDNLHTLSTSSHGK 146
Query: 425 TENTIASTTYSETSDKLVS*RFGLGDSAKTTSSHLFSIQXYRLLWNVESLLXYGSQLTDS 246
+++T+ +++ +T +L FGL S +T+ + +ESL G QL DS
Sbjct: 147 SQHTVGGSSHWQTVQQLGFQGFGLDSSGQTSLLDSLGVDDNSFRRQLESLDNQGGQLVDS 206
Query: 245 ASFLSEHTLCPGGHNNDLRADGSDPDFHAGVAVLGQLPSEELIEFRLENSISNKFSLL 72
S S++TL G +N+L+ D + GV + Q EE ++ +E++IS + S L
Sbjct: 207 TSLFSQNTLGVGSLDNNLQLGWGLSDLNTGVTLFSQFSGEEFVQLGVEDTISYQLSFL 264
>UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S3P - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 224
Score = 86.6 bits (205), Expect = 4e-16
Identities = 54/174 (31%), Positives = 88/174 (50%)
Frame = +3
Query: 75 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 254
K F+ + K L+EFL + GY+G+E+ TP ++I A ++G G IR
Sbjct: 7 KSYFIDYSLKKVMLDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIR 66
Query: 255 ELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 434
+L ++ Q F + ++V + V L A A + L + RR +LR +M
Sbjct: 67 KLMTIMQTHFGL--ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVM 124
Query: 435 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLRQXV 596
E+GA G E+++SGKLR +RA+ K G + +GD + V+ A LL++ V
Sbjct: 125 EAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLKRGV 178
>UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6;
Pyrobaculum|Rep: 30S ribosomal protein S3P - Pyrobaculum
aerophilum
Length = 218
Score = 84.6 bits (200), Expect = 2e-15
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 1/177 (0%)
Frame = +3
Query: 78 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 257
+K + + K + EFL L++ GY E+ TP+ + I+I A R ++G KG ++E
Sbjct: 12 KKILEENKKKWMIKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKE 71
Query: 258 LTSVXQKRFNIPXQSVXLY-AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 434
++++ + + + + K+ + A + + G+ RR + +R +M
Sbjct: 72 ISNILTTKLGVENPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLM 131
Query: 435 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLRQXVLRI 605
E+GA+G E+VVSGKL +RA+ K G + G + V A HVLL+ + I
Sbjct: 132 EAGAKGFEIVVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGI 188
>UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S3P -
Thermoplasma acidophilum
Length = 225
Score = 81.0 bits (191), Expect = 2e-14
Identities = 44/178 (24%), Positives = 93/178 (52%)
Frame = +3
Query: 72 KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 251
K+RKF+ + V + + E++ +E G+ + ++ TP + I + R V+G +G ++
Sbjct: 2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKV 61
Query: 252 RELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 431
+++T +K++ I + + + V L A+ + L G + R+A L
Sbjct: 62 QQMTDTLEKKYGIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRT 119
Query: 432 MESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLRQXVLRI 605
+++GA+G + +SGK+ G+RA+ KF+ G + +SG+P + + T L+ +L +
Sbjct: 120 IQAGAKGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMITGFSTAKLKVGILGV 177
>UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P -
Cenarchaeum symbiosum
Length = 261
Score = 78.6 bits (185), Expect = 1e-13
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 1/143 (0%)
Frame = +3
Query: 111 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVXQKRFNI 290
+L EFL + + G+SGVEV P ++I + TR V+G KG IRELT +K F++
Sbjct: 16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDL 75
Query: 291 PXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME-SGARGCEVVV 467
V + +++ T L + + G A RRA ++ IME A G ++ +
Sbjct: 76 KSPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITI 133
Query: 468 SGKLRGQRAKSMKFVXGLMIHSG 536
SGKLRG R+ K G++ +G
Sbjct: 134 SGKLRGDRSAFEKHTSGILPRAG 156
>UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3-like -
Caldivirga maquilingensis IC-167
Length = 226
Score = 76.6 bits (180), Expect = 4e-13
Identities = 42/176 (23%), Positives = 87/176 (49%)
Frame = +3
Query: 78 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 257
++ + D K + E+L L + Y ++ T + + I+I+A + ++G KG++++
Sbjct: 3 KRIIDDNKKKWMIKEYLNIALTRNRYVDSIIQRTTLGTRIVIIAEKKNRIIGRKGQQVKA 62
Query: 258 LTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 437
L + + +FN+ + + E +A + + G+ RRA LR + E
Sbjct: 63 LADILKSKFNLDNVVIDVIQEPHPEYNARLVALR--IADAMAKGIRFRRAAIIALRQLQE 120
Query: 438 SGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLRQXVLRI 605
+ +G EV++SGKL +R++ K+ G++I +G + V A VLL+ + +
Sbjct: 121 ANVQGAEVIISGKLTTERSRFEKYTTGIVIKAGQDALEKVQEAVIPVLLKPGIFSV 176
>UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmental
samples|Rep: Ribosomal protein S3 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 307
Score = 76.2 bits (179), Expect = 6e-13
Identities = 46/161 (28%), Positives = 80/161 (49%)
Frame = +3
Query: 78 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 257
R F+ V + + E+L RE G+ G+E TP +++ + A + V+G +G+ I E
Sbjct: 9 RTFINRNVERHMVREYLLRETERAGFGGLEFNRTPEGTKVTLSAEQVGRVIGRRGKVIHE 68
Query: 258 LTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 437
L + F + ++ L ++ L A A L L G RRA + + IM+
Sbjct: 69 LQYRLKSDFKL--ENPRLEVNEIEEPRLNAQVMASRLASSLERGWFFRRAGHSTAQNIMD 126
Query: 438 SGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVN 560
+GARGC +++SGK+ G R + KF G + G+ +++
Sbjct: 127 AGARGCLIILSGKISGPRHRVQKFQQGHIKFCGETALQFMD 167
>UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 149
Score = 69.3 bits (162), Expect = 7e-11
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = +3
Query: 135 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 269
+++EDGYSGV+VRVTP+R EIII ATRTQ+ LGEK RRIREL V
Sbjct: 16 DISEDGYSGVQVRVTPMRMEIIIHATRTQNALGEKRRRIRELILV 60
>UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_85, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 514
Score = 66.1 bits (154), Expect = 6e-10
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +3
Query: 135 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 269
++ EDGYS V+VRVTP+ EIII ATRTQ+ L EKGRRIRELT V
Sbjct: 406 DILEDGYSDVKVRVTPMGMEIIIRATRTQNALSEKGRRIRELTLV 450
Score = 42.7 bits (96), Expect = 0.006
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +3
Query: 135 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 230
++ EDGYS ++V+VT +R EIII ATRTQ+ L
Sbjct: 281 DIPEDGYSDIKVKVTGMRMEIIIHATRTQNAL 312
>UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 286
Score = 66.1 bits (154), Expect = 6e-10
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = +3
Query: 135 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 269
++ EDGYS V+VRVTP+ EII+ ATRTQ+ L EKGRRIRELT V
Sbjct: 139 DILEDGYSNVKVRVTPMGMEIIVRATRTQNALSEKGRRIRELTLV 183
>UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 151
Score = 64.9 bits (151), Expect = 1e-09
Identities = 32/46 (69%), Positives = 37/46 (80%)
Frame = +3
Query: 63 NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEII 200
+ISK+RKFV GVF A LN F RELAE+GYSGVEVRVTP ++II
Sbjct: 84 DISKRRKFVVGGVFYAGLNGFFLRELAEEGYSGVEVRVTPTGTDII 129
>UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3P -
Nanoarchaeum equitans
Length = 230
Score = 56.8 bits (131), Expect = 4e-07
Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 1/154 (0%)
Frame = +3
Query: 78 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 257
RKF+ + EF+ L S V +R TPI + +II + R + + E+ + +
Sbjct: 7 RKFIQNAKLTVFSQEFIRLYLRGANVSKVIIRQTPIVNRVIIYSARPKMISEERKAHLAK 66
Query: 258 LTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGL-AVRRACYGVLRFIM 434
L + +F + + + + L A AE L + + A RR L IM
Sbjct: 67 LLEL---KFGLEKPVIEVLP--IENPNLDAHVIAERLAMGIERNIRAYRRLAQRYLETIM 121
Query: 435 ESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSG 536
+GA G E+V++G+L GQR K+ +F G + +G
Sbjct: 122 NAGAIGAEIVIAGRLSGQRGKTWRFKAGNLRKTG 155
>UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2;
Deinococcus|Rep: 30S ribosomal protein S3 - Deinococcus
radiodurans
Length = 249
Score = 55.6 bits (128), Expect = 9e-07
Identities = 35/137 (25%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Frame = +3
Query: 111 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVXQKRFNI 290
++ + + ++LA G + +E+ + +II A + V+G+ G I+EL ++ +
Sbjct: 38 QIRQLINKKLAAAGIARIEIERAGQQVNVIISAAKPGVVIGKGGESIKELRGDIERL--V 95
Query: 291 PXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 470
+V + ++ + A A + ++ A RRA + +MESGARG +V++S
Sbjct: 96 SAGTVAVNVAEIPNPNISAPLVALRIAEQIERRFAFRRAMKQAAQRVMESGARGVKVILS 155
Query: 471 GKLRG-QRAKSMKFVXG 518
G+L G ++A++ K + G
Sbjct: 156 GRLGGAEQARTEKVLEG 172
>UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zinnia
elegans|Rep: Putative ribosomal protein S3 - Zinnia
elegans (Zinnia)
Length = 143
Score = 54.8 bits (126), Expect = 2e-06
Identities = 25/40 (62%), Positives = 30/40 (75%)
Frame = +3
Query: 486 QRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLRQXVLRI 605
QRAKSMKF G M+ SG P +Y+++A RHVLLRQ VL I
Sbjct: 2 QRAKSMKFKDGYMVSSGQPVKEYIDSAVRHVLLRQGVLGI 41
>UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 414
Score = 53.2 bits (122), Expect = 5e-06
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +3
Query: 135 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVXQ 275
++ EDGYS ++V+VT + EIII AT+TQ+ L E GR++RELT V +
Sbjct: 238 DIPEDGYSDIKVKVTGMCMEIIIRATQTQNALIENGRKMRELTLVTR 284
>UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 262
Score = 52.8 bits (121), Expect = 6e-06
Identities = 24/69 (34%), Positives = 41/69 (59%)
Frame = +3
Query: 399 RRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHV 578
R + LRF++ SG RGC + + G R +R K+ KF GL+ HSG ND++++ + ++
Sbjct: 158 RSIIFNTLRFLINSGVRGCMIKLKGVYRSKRTKTFKFRRGLISHSGIQNNDWIDSDSFYL 217
Query: 579 LLRQXVLRI 605
++ L I
Sbjct: 218 NKKRGTLGI 226
>UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3;
Planctomycetaceae|Rep: 30S ribosomal protein S3 -
Rhodopirellula baltica
Length = 236
Score = 48.0 bits (109), Expect = 2e-04
Identities = 37/144 (25%), Positives = 72/144 (50%), Gaps = 5/144 (3%)
Frame = +3
Query: 69 SKKRKFVGDGVFKAELNEFLTRELAEDGY--SGVE-VRVTPIRSEIIIM--ATRTQSVLG 233
+ K+ F V ++ EF+T+ + Y +G++ + + R E+ +M R ++G
Sbjct: 24 ASKQDFADLLVEDRKIREFITKHPKKSQYKSAGIDRIEIERTRDEVRVMLYVARPGLIIG 83
Query: 234 EKGRRIRELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 413
+KG+ I L + Q N+ + + L E+V L A AE + +L + RR
Sbjct: 84 KKGQEIEILQAELQ---NLVGRRINLKVEEVGRPELQAQLVAEDISQQLAKRSSFRRTMK 140
Query: 414 GVLRFIMESGARGCEVVVSGKLRG 485
+L M++GA+G ++ ++G+L G
Sbjct: 141 RMLEQTMDAGAKGIKIQMAGRLGG 164
>UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197;
Bacteria|Rep: 30S ribosomal protein S3 - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 301
Score = 47.6 bits (108), Expect = 2e-04
Identities = 36/139 (25%), Positives = 62/139 (44%)
Frame = +3
Query: 69 SKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRR 248
+ R F G ++ E+L +L S V + + I I + R V+G+KG
Sbjct: 24 ASNRDFAGMLAEDIKVREYLKAKLKNAAVSRVLIERPAKNARITIFSARPGVVIGKKGED 83
Query: 249 IRELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRF 428
I L ++ +P V + E+V + A A+S+ +L + RRA ++
Sbjct: 84 IENLKKELSRQLGVP---VAVNIEEVRKPEIDAKLIADSITQQLEKRIMFRRAMKRAMQN 140
Query: 429 IMESGARGCEVVVSGKLRG 485
M GA G +++ SG+L G
Sbjct: 141 AMRLGALGIKIMSSGRLNG 159
>UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9;
Mycoplasma|Rep: 30S ribosomal protein S3 - Mycoplasma
mobile
Length = 225
Score = 47.2 bits (107), Expect = 3e-04
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Frame = +3
Query: 195 IIIMATRTQSVLGEKGRRIRELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRY 374
+++ + + ++LG+ G I +LT QK + + + L AI AE +
Sbjct: 67 VLVHSAKPGAILGQNGENINKLTQDIQKLLRNKELKLNIEVVNIKNPDLNAIILAEQIAI 126
Query: 375 KLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVXGLM 524
KL R A +R M+SGA+G + VSG+L G A+S + G M
Sbjct: 127 KLENRAPFRVAQKFAIRNAMKSGAKGIKTQVSGRLNGVDMARSEGYSEGEM 177
>UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19;
Bacteroidetes|Rep: 30S ribosomal protein S3 -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 246
Score = 46.4 bits (105), Expect = 5e-04
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Frame = +3
Query: 108 AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVXQKRFN 287
+ + ++L LA+ S + + I I R ++G+ G+ + +L ++
Sbjct: 36 SRIRQYLNARLAKASVSRIVIERALKLVTITICTARPGMIIGKAGQEVDKLKEELKR--- 92
Query: 288 IPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 467
I + V + ++ L A AE++ +L G +A RRA + M GA G ++ V
Sbjct: 93 ITKKDVQINIYEIRKPELDAAIVAENIARQLEGKIAYRRAVKMAIASAMRMGAEGIKIQV 152
Query: 468 SGKLRG-QRAKSMKFVXG 518
SG+L G + A+S F G
Sbjct: 153 SGRLNGAEMARSEMFKEG 170
>UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponema
pallidum|Rep: 30S ribosomal protein S3 - Treponema
pallidum
Length = 247
Score = 46.0 bits (104), Expect = 7e-04
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 8/153 (5%)
Frame = +3
Query: 51 MAVNNISKKRKFVGDGVFKAELNEFLT--------RELAEDGYSGVEVRVTPIRSEIIIM 206
+ +N + R + G + A L+E L E + VE+ P R +++
Sbjct: 12 LGINKVWSSRWYAGPREYAALLHEDLRIRSMIRSFPECKNADIAEVEIVRHPQRVTVVMH 71
Query: 207 ATRTQSVLGEKGRRIRELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIG 386
R V+G KG I ++ + QKR N + V + +++ L A A+++ +L
Sbjct: 72 TARPGVVIGAKGVNIEKIGAEVQKRLN---KKVQIKVKEIKRMELNAYLVAQNVARQLTA 128
Query: 387 GLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 485
++ R+ M+SGA+G ++ VSG+L G
Sbjct: 129 RVSFRKCLRQACAGTMKSGAQGVKIRVSGRLGG 161
>UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellular
organisms|Rep: 30S ribosomal protein S3 - Azoarcus sp.
(strain BH72)
Length = 260
Score = 45.6 bits (103), Expect = 0.001
Identities = 32/125 (25%), Positives = 59/125 (47%)
Frame = +3
Query: 111 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVXQKRFNI 290
++ ++L + LA V + + + + + R V+G+KG I L QK +
Sbjct: 38 KVRDYLKKRLAHASVGRVVIERPAKNARVTLFSARPGVVIGKKGEDIEALKRDLQKIVGV 97
Query: 291 PXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 470
P V + E+V + A A+S+ +L + RRA ++ M GA+G +++ S
Sbjct: 98 P---VHVNIEEVRKPEIDAKLIADSIAQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSS 154
Query: 471 GKLRG 485
G+L G
Sbjct: 155 GRLNG 159
>UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobacter
sp. BAL39|Rep: 30S ribosomal protein S3 - Pedobacter sp.
BAL39
Length = 281
Score = 45.2 bits (102), Expect = 0.001
Identities = 34/150 (22%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Frame = +3
Query: 111 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVXQKRFNI 290
++ ++L+ +A+ G + V + T R + I R V+G+ G+ + ++ +K +
Sbjct: 37 KIRKYLSARIAKGGVAKVVIERTLKRITVTIHTARPGIVIGKAGQEVDKIKEELKK---L 93
Query: 291 PXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 470
+ + + ++ L A AE + +L ++ RRA + M GA G +++ S
Sbjct: 94 TKKEIQINIFEIKRPELDAQLVAEGVAKQLEARISFRRAMKSTIAATMRMGAEGIKIMTS 153
Query: 471 GKLRG-QRAKSMKFVXG-LMIHSGDPCNDY 554
G+L G + A+S ++ G + +H+ DY
Sbjct: 154 GRLGGAEMARSEQYKEGRIPLHTFRADIDY 183
>UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5;
Thermotogaceae|Rep: 30S ribosomal protein S3 -
Thermotoga maritima
Length = 209
Score = 44.4 bits (100), Expect = 0.002
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Frame = +3
Query: 111 ELNEFLTRELAEDGYSGVEV-RVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVXQKRFN 287
E+ + + + G S + V R R I + R ++G KG I L +++FN
Sbjct: 37 EIRKIIKNKYYHAGISEIYVERPDAERINITVKTARPGIIIGRKGSEITSLREELERKFN 96
Query: 288 IPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 467
+ V + E++ T L A AES+ ++ + + A + M GA+G +V+V
Sbjct: 97 ---RRVVINIEEIKTPELDAQLVAESIASRIEKRASYKVAMKRAIMNAMRKGAQGIKVMV 153
Query: 468 SGKLRG 485
+G+L G
Sbjct: 154 AGRLGG 159
>UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94;
Bacteria|Rep: 30S ribosomal protein S3 - Frankia sp.
(strain CcI3)
Length = 315
Score = 42.7 bits (96), Expect = 0.006
Identities = 34/144 (23%), Positives = 65/144 (45%)
Frame = +3
Query: 78 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 257
+ +VG+ V ++ + ++R + G S V++ T R + I R V+G +G
Sbjct: 29 KAYVGEDV---KIRKMMSRGMERAGISRVDIERTQGRLRVDIHTARPGIVIGRRGAEADR 85
Query: 258 LTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 437
+ +K + + V L +V + A A+ + +L ++ RRA ++ M+
Sbjct: 86 IRGDLEK---LTGKQVQLNILEVKNPEVDAQLVAQGVAEQLSSRVSFRRAMRKAMQTAMK 142
Query: 438 SGARGCEVVVSGKLRGQRAKSMKF 509
GA+G V SG+L G +F
Sbjct: 143 GGAKGIRVQCSGRLGGAEMSRSEF 166
>UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10;
Chlorobiaceae|Rep: 30S ribosomal protein S3 - Chlorobium
tepidum
Length = 253
Score = 42.7 bits (96), Expect = 0.006
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 2/169 (1%)
Frame = +3
Query: 81 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 260
K D V + ++ L +E A G + + + T +I I A R +++G KG I L
Sbjct: 32 KIKQDQVIRNYVHARLKKEKA--GIAKIVIERTTKHIKINIYAARPGAIVGHKGEEINNL 89
Query: 261 TSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 440
+ Q+ I + V + +V + A E++ Y+L ++ RRA ++ M +
Sbjct: 90 S---QELTRITGKEVKIDVIEVIKPEIEAQLIGENIAYQLENRVSFRRAMKMAIQQAMRA 146
Query: 441 GARGCEVVVSGKLRG-QRAKSMKFVXG-LMIHSGDPCNDYVNTATRHVL 581
GA G + +G+L G + A++ ++ G + +H+ DY + T H +
Sbjct: 147 GAEGVRIRCAGRLGGAEIARAEQYKEGKIPLHTLRANVDYA-SVTAHTI 194
>UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27;
Bacteria|Rep: 30S ribosomal protein S3 -
Propionibacterium acnes
Length = 269
Score = 41.9 bits (94), Expect = 0.011
Identities = 34/135 (25%), Positives = 59/135 (43%)
Frame = +3
Query: 81 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 260
+ VG+ V ++ E+L + L G S +E+ R I + A R V+G G +
Sbjct: 30 ELVGEDV---KIREWLHKNLERAGLSSIEIERRSERVTIFLYAARPGIVIGRNGAEAERV 86
Query: 261 TSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 440
+K + + + L +V + A A+ + +L +A RRA + M +
Sbjct: 87 RGELEK---LTGKQIQLNILEVKSPETDAQLVAQGIAEQLAARVAFRRAMRKAQQSAMNA 143
Query: 441 GARGCEVVVSGKLRG 485
GA G + SG+L G
Sbjct: 144 GALGIRIKCSGRLGG 158
>UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 283
Score = 41.5 bits (93), Expect = 0.015
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 1/134 (0%)
Frame = +3
Query: 87 VGDGVFK-AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELT 263
VGD + + ++ +FL + G +E+ + I + R V+G+ G I L
Sbjct: 29 VGDLLVEDKKIRDFLKKTQYGAGIPKIEIERDNAKVRIYLHCARPGVVIGKGGEAIEALR 88
Query: 264 SVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESG 443
+K +SV L +V + A AE++ +L + RRA + M G
Sbjct: 89 LQLEKMLG---KSVALNIVEVKNPDMDAQLIAENIAQQLEKRIGFRRAMKNAMGRAMRMG 145
Query: 444 ARGCEVVVSGKLRG 485
ARG + VSG+L G
Sbjct: 146 ARGIKTQVSGRLGG 159
>UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39;
Bacteria|Rep: 30S ribosomal protein S3 - Streptococcus
pneumoniae
Length = 217
Score = 41.1 bits (92), Expect = 0.020
Identities = 29/124 (23%), Positives = 58/124 (46%)
Frame = +3
Query: 114 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVXQKRFNIP 293
+ +F+ +ELA+ S +E+ + + + + V+G+ G + L + K +
Sbjct: 38 IRKFVQKELADAAVSTIEIERAVNKVNVSLHTAKPGMVIGKGGANVDALRAKLNK---LT 94
Query: 294 XQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 473
+ V + ++ L A E + +L +A RRA ++ M +GA+G + VSG
Sbjct: 95 GKQVHINIIEIKQPDLDAHLVGEGIARQLEQRVAFRRAQKQAIQRAMRAGAKGIKTQVSG 154
Query: 474 KLRG 485
+L G
Sbjct: 155 RLNG 158
>UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n=1;
unknown|Rep: UPI00015BD7E8 UniRef100 entry - unknown
Length = 231
Score = 40.7 bits (91), Expect = 0.026
Identities = 29/138 (21%), Positives = 68/138 (49%), Gaps = 1/138 (0%)
Frame = +3
Query: 114 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVXQKRFNIP 293
+ +++ G S V + + + + I++++ ++G KG + +L + ++ +
Sbjct: 39 IRKYIKERYKSAGISKVTIERSGEKIRVRILSSKPGIIIGRKGAEVDQLKNDLERI--VK 96
Query: 294 XQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 473
+ + L ++V L A AE + ++ ++ RRA + ++SGA+G +V V G
Sbjct: 97 NKDISLSVDEVRVPQLDAQLVAEDIALQIERRVSHRRAMKRAIDNAIKSGAKGIKVQVKG 156
Query: 474 KLRG-QRAKSMKFVXGLM 524
++ G A++ F+ G M
Sbjct: 157 RIGGADLARAEWFLVGRM 174
>UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18;
Bacteria|Rep: 30S ribosomal protein S3 - Dehalococcoides
sp. (strain CBDB1)
Length = 278
Score = 39.5 bits (88), Expect = 0.060
Identities = 27/125 (21%), Positives = 61/125 (48%)
Frame = +3
Query: 111 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVXQKRFNI 290
+L + ++++ + S V++ + + + R V+G G+R+ E+ + ++
Sbjct: 38 KLRKAISKKYVDAAISQVDIERQSNKVTVSVRTARPGIVIGRGGQRVDEMRHFLE---DL 94
Query: 291 PXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 470
+ V L +++ L A A S+ ++ +A RRA + M++GA+G ++ S
Sbjct: 95 IGKKVQLNIVEISQAELDAFLVARSVAEQIERRVAYRRAMKQAIFRSMQAGAKGIKICAS 154
Query: 471 GKLRG 485
G+L G
Sbjct: 155 GRLGG 159
>UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4;
Leptospira|Rep: 30S ribosomal protein S3 - Leptospira
interrogans
Length = 225
Score = 39.1 bits (87), Expect = 0.080
Identities = 27/125 (21%), Positives = 52/125 (41%)
Frame = +3
Query: 111 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVXQKRFNI 290
++ +F+ G V + P + + + + V+G+KG I + + + +
Sbjct: 37 KIRKFVQNRFNNAGVVKVVIERFPEKINVNLHTAKPGIVIGQKGANIEAVKKILKTMTDK 96
Query: 291 PXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 470
P + +K T C AES+ ++ RR LR M G G ++++S
Sbjct: 97 PVNLNIIEVKKPETVAQCI---AESIALQIEQRQPFRRVMKQELRRAMRGGVEGIKILIS 153
Query: 471 GKLRG 485
G+L G
Sbjct: 154 GRLNG 158
>UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococcus
oeni PSU-1|Rep: 30S ribosomal protein S3 - Oenococcus
oeni (strain BAA-331 / PSU-1)
Length = 267
Score = 38.3 bits (85), Expect = 0.14
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Frame = +3
Query: 114 LNEFLTRELAEDGYSGVEV-RVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVXQK---R 281
+ ++L L + + + R P R + I + V+G G + L S K
Sbjct: 39 IRKYLETNLKDAAVDRITIERTEPTRINLTIHTAKPGIVIGRGGADVERLRSELSKIVDT 98
Query: 282 FNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEV 461
+ + V + ++ L A + + L +A RRA G ++ + +GA+G
Sbjct: 99 YKGQHKRVNINIVEIRKPDLNAHLVGQQIAADLERRVAFRRAMRGAIQRVQRAGAKGVRT 158
Query: 462 VVSGKLRG 485
+VSG+L G
Sbjct: 159 MVSGRLNG 166
>UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplasma
parvum|Rep: 30S ribosomal protein S3 - Ureaplasma parvum
(Ureaplasma urealyticum biotype 1)
Length = 257
Score = 37.1 bits (82), Expect = 0.32
Identities = 30/139 (21%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Frame = +3
Query: 111 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVXQKRFNI 290
++ ++L+ + G VE+ R + + A ++ ++G + ++L + +
Sbjct: 39 KIRKYLSTKYKNAGIDHVEIERDQQRVNVYVYAVQSGLLIGTEASE-KKLIELAINKIVG 97
Query: 291 PXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 470
Q V L +V L A A + + ++ R A V++ ++++GARG + VS
Sbjct: 98 RKQLVSLKVVEVQIPELQASLMAREIADAIENRVSFRIAQKMVIKKVLKAGARGIKTHVS 157
Query: 471 GKLRG-QRAKSMKFVXGLM 524
G+L G + A+ + G+M
Sbjct: 158 GRLGGVEMAREEGYTQGVM 176
>UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n=2;
Chlorophyta|Rep: Chloroplast 30S ribosomal protein S3 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 235
Score = 37.1 bits (82), Expect = 0.32
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Frame = +3
Query: 162 VEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVXQKRFNI-----PXQSVXLYAEKV 326
VEV + R +++ R +K +++R+ V +F P V L V
Sbjct: 66 VEVEIRTTRPGLLVGRKRQNC---DKLKQLRDELQVELNKFRAKNGVSPTAKVALQVTTV 122
Query: 327 ATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 485
+ AI AE L +L +A RRA VL I +G ++ VSG+L G
Sbjct: 123 QNKSSEAIVIAEFLVNQLERRIAFRRALRRVLSIIQRDRVQGAKIQVSGRLNG 175
>UniRef50_A0MNG0 Cluster: Putative uncharacterized protein; n=1;
Thermus phage phiYS40|Rep: Putative uncharacterized
protein - Thermus phage phiYS40
Length = 1014
Score = 35.9 bits (79), Expect = 0.74
Identities = 24/83 (28%), Positives = 41/83 (49%)
Frame = +3
Query: 87 VGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTS 266
+ + +FK+E FL+R L+E Y+ ++ RS I R L +K + E+
Sbjct: 224 ISERIFKSEREIFLSRTLSEF-YNESLNAISIARSNFIAQLNRVNESL-QKAQSPEEVAR 281
Query: 267 VXQKRFNIPXQSVXLYAEKVATR 335
+ ++RFN LYAE++ R
Sbjct: 282 LQEERFNYLKSLTQLYAEELKIR 304
>UniRef50_Q52188 Cluster: TraC precursor; n=9; root|Rep: TraC
precursor - Enterococcus faecalis (Streptococcus
faecalis)
Length = 545
Score = 35.5 bits (78), Expect = 0.98
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +3
Query: 84 FVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIII 203
FVGDG F+ + EFL +L E+ G++V +TP+ + + +
Sbjct: 397 FVGDGEFEKKAGEFLQGQL-EENLEGLKVNITPVPANVFM 435
>UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 617
Score = 35.5 bits (78), Expect = 0.98
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +3
Query: 198 IIMATRTQSVLGEK-GRRIRELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRY 374
+I TRT S+ + ++IREL SV Q +I + A A RGL A+ ES+R
Sbjct: 101 VIRQTRTLSMTSAQFPKKIRELQSVTQSYVSIDATTKDKAAALAAARGLGRNAKIESVRL 160
Query: 375 KLIGGLAVRRACYGVLRFIMESGARG 452
++ L + +C G+ M + + G
Sbjct: 161 PMLTVLKL-HSCEGITSASMAAISHG 185
>UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3;
n=78; Streptophyta|Rep: Chloroplast 30S ribosomal
protein S3 - Arabidopsis thaliana (Mouse-ear cress)
Length = 218
Score = 35.1 bits (77), Expect = 1.3
Identities = 22/122 (18%), Positives = 58/122 (47%)
Frame = +3
Query: 147 DGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVXQKRFNIPXQSVXLYAEKV 326
+G + +E++ +III + ++ +K RR+ EL QK N + + + ++
Sbjct: 58 EGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRI 117
Query: 327 ATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMK 506
+ AE + +L ++ R+A + ++ +G +V ++G++ G+ ++
Sbjct: 118 SNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVE 177
Query: 507 FV 512
++
Sbjct: 178 WI 179
>UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellular
organisms|Rep: 30S ribosomal protein S3 - Mesorhizobium
sp. (strain BNC1)
Length = 235
Score = 34.7 bits (76), Expect = 1.7
Identities = 29/125 (23%), Positives = 55/125 (44%)
Frame = +3
Query: 111 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVXQKRFNI 290
++ ++ EL + S V + + + I + R ++G+KG I +L +K +
Sbjct: 38 KIRTYIENELKQAAISKVVIERPHKKCRVTIHSARPGLIIGKKGADIEKLR---RKITQM 94
Query: 291 PXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 470
L +V + A A+S+ +L +A RRA ++ M GA G + +
Sbjct: 95 TNAETHLNIVEVRKPEIDARLIAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCT 154
Query: 471 GKLRG 485
G+L G
Sbjct: 155 GRLGG 159
>UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;
n=2; Rattus norvegicus|Rep: PREDICTED: hypothetical
protein - Rattus norvegicus
Length = 328
Score = 34.3 bits (75), Expect = 2.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 353 PGRISKIQAYRRSRCTSCLLWCSPFHH 433
PGR +A RRSRC+ C W HH
Sbjct: 240 PGRDWSAEASRRSRCSRCCTWSGDIHH 266
>UniRef50_Q5CD89 Cluster: Outer membrane protein; n=8; Histophilus
somni|Rep: Outer membrane protein - Haemophilus somnus
(Histophilus somni)
Length = 384
Score = 33.5 bits (73), Expect = 4.0
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Frame = -3
Query: 545 ARVSRVDHESXYKLH*FGTLTTQLARYNNFTTTGARFHDETENTIASTTYSETSDKLVS* 366
A + V +++ K+ G + L ++ + T R +D A + +
Sbjct: 17 ANATTVYNQNGTKVEVGGRVDVMLGKFGDAQRTDLRNNDSRVEFKAEHEVQNGLKAIGAV 76
Query: 365 RFGLGDSAKTTSSHLFSIQXYRLLW-----NVESLLXYGSQLTDSASF-LSEHTLCPGGH 204
RFGLGDS++ SS F LW N + +G Q T + L++HT GG+
Sbjct: 77 RFGLGDSSEEDSS--FKEIKLSKLWLGLKHNDIGKVTFGKQNTTADDVQLNDHTYIFGGN 134
Query: 203 NN 198
NN
Sbjct: 135 NN 136
>UniRef50_Q2RZ88 Cluster: Putative uncharacterized protein; n=1;
Salinibacter ruber DSM 13855|Rep: Putative
uncharacterized protein - Salinibacter ruber (strain DSM
13855)
Length = 363
Score = 33.1 bits (72), Expect = 5.2
Identities = 28/109 (25%), Positives = 43/109 (39%)
Frame = +3
Query: 225 VLGEKGRRIRELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 404
+L RR + R++ S + R + +A E Y L RR
Sbjct: 245 LLANPSRRTITSVDLGLVRYDRGPDSTAQNVRRRTVRVVGPLAPRELAAYDLRLPNEARR 304
Query: 405 ACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCND 551
C GV R +E G VV + + G+R K + G + ++GD C D
Sbjct: 305 PCVGVRRVRVER-LDGTTVVSAPRRPGRRPKRGRLARGALPYAGDDCLD 352
>UniRef50_Q6FX91 Cluster: Candida glabrata strain CBS138 chromosome
B complete sequence; n=1; Candida glabrata|Rep: Candida
glabrata strain CBS138 chromosome B complete sequence -
Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 445
Score = 33.1 bits (72), Expect = 5.2
Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Frame = +3
Query: 24 SFSRLPXAIMAVNNISKKRK--FVGDGVFKAELNEFLTRELAEDGYSGVEV 170
SF L A+MA+NN++++ + F D + K +EFL +L++DGY+ +E+
Sbjct: 254 SFYPLQPAMMAINNVARQIEYYFSADNMNK---DEFLKTKLSKDGYAPLEL 301
>UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8;
Euteleostomi|Rep: Transmembrane protein 56 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 264
Score = 32.7 bits (71), Expect = 6.9
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 408 CYGVLRFI-MESGARGCEVVVSGKLRGQRAKSMK 506
C +L I M ARGC V++GKL+G++A S K
Sbjct: 222 CLDILNIIWMYKIARGCYKVITGKLKGRKADSKK 255
>UniRef50_Q0D5D7 Cluster: Os07g0567500 protein; n=5;
Magnoliophyta|Rep: Os07g0567500 protein - Oryza sativa
subsp. japonica (Rice)
Length = 478
Score = 32.3 bits (70), Expect = 9.2
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +2
Query: 401 SCLLWCSPFHHGIWRPWL*SCCIWQAAWSTCQINEVCXWTHD 526
SCL WC F H R L S C AAW +N C H+
Sbjct: 246 SCLGWCGGFRHTPCRRGLSSECGGAAAWDQPTVNLRCPPCHE 287
>UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1;
n=9; Endopterygota|Rep: Drosophila dodeca-satellite
protein 1 - Drosophila melanogaster (Fruit fly)
Length = 1301
Score = 32.3 bits (70), Expect = 9.2
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 177 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVXQKRFNIPXQS 302
T ++ + + +LG+ G+R+RE+ V R NIP QS
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQS 208
>UniRef50_Q225J0 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 281
Score = 32.3 bits (70), Expect = 9.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 334 RVATFSAYNXTDCXGMLNRFCXTEVSSRILRPFSPSTLCVL 212
R AT Y +DC + +FC +++S I+ S +C+L
Sbjct: 58 REATTYCYTTSDCIRSIYQFCRSQISRHIINERENSQICLL 98
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,516,735
Number of Sequences: 1657284
Number of extensions: 11466724
Number of successful extensions: 29822
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 28923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29782
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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