Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_J23
         (607 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)       315   2e-86
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)                      30   1.7  
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)       29   2.2  
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)                  28   6.7  
SB_52203| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)             27   8.9  
SB_15903| Best HMM Match : Gate (HMM E-Value=6)                        27   8.9  

>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
          Length = 240

 Score =  315 bits (773), Expect = 2e-86
 Identities = 155/180 (86%), Positives = 164/180 (91%)
 Frame = +3

Query: 66  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 245
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGR 64

Query: 246 RIRELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 425
           RIRELTSV QKRF  P  SV LYAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVLR
Sbjct: 65  RIRELTSVVQKRFGFPEGSVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVLR 124

Query: 426 FIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLRQXVLRI 605
           FIMESGA+GCEVVVSGKLRGQRAKSMKFV GLM+H+G+P   YV+TA RHV LRQ VL I
Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMVHAGEPTTHYVDTAVRHVYLRQGVLGI 184


>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
          Length = 401

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 470 WQAAWSTCQINEVCXWTHDPLW 535
           W+ AW+ C + E   +T++P W
Sbjct: 76  WKQAWTPCSLQETTIYTNNPPW 97


>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
          Length = 976

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 464 CIWQAAWSTCQINEVCXWTHDPLWRP 541
           C W + W   +  E   WTH P  RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210


>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 329 YSWSLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWRPW 451
           Y+W L + P  +  ++ Y R    +  L C+P  +  W  W
Sbjct: 4   YNWWLAWNPALLCLMRQYNRWLAWNPALLCNPRQYNRWLAW 44


>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
          Length = 1799

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = +1

Query: 31  LGSRLQSWP*TIFQRSENLLE 93
           LGSR+QS+P +I+Q +EN +E
Sbjct: 406 LGSRMQSYPTSIWQDTENGIE 426


>SB_52203| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)
          Length = 611

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +2

Query: 326 GYSWSLRYRPGRISKIQAYRRSRCTSCLLWCSP 424
           GY+++LRY+P  ++     R++R  + +LW +P
Sbjct: 363 GYNYTLRYKPNTVTN----RKTRKRNNILWYNP 391


>SB_15903| Best HMM Match : Gate (HMM E-Value=6)
          Length = 444

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 326 GYSWSLRYRPGRISKIQAYRRSRCTSCLLW 415
           G +W +R  P  + + +A+R +R  SC LW
Sbjct: 88  GKNWKVRASPAWVRRYRAFRHAR--SCSLW 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,889,655
Number of Sequences: 59808
Number of extensions: 377887
Number of successful extensions: 1059
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)