Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_J23
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal prote...   285   1e-77
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr...    31   0.64 

>U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 3 protein.
          Length = 247

 Score =  285 bits (700), Expect = 1e-77
 Identities = 140/186 (75%), Positives = 158/186 (84%), Gaps = 1/186 (0%)
 Frame = +3

Query: 51  MAVN-NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 227
           MA N N++KK+K V  G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+V
Sbjct: 1   MAANQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNV 60

Query: 228 LGEKGRRIRELTSVXQKRFNIPXQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 407
           LGE+GRRI+ELTSV QKRF     SV LYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRA
Sbjct: 61  LGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRA 120

Query: 408 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLR 587
           CYGVLRFIMESGA+G EV+VSGKLRGQRAK+MKFV GLMIHSG P NDY+  A RHV LR
Sbjct: 121 CYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLR 180

Query: 588 QXVLRI 605
           Q V+ I
Sbjct: 181 QGVIGI 186


>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical protein
            C05C10.2b protein.
          Length = 1553

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +3

Query: 21   PSFSRLPXAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 155
            P    L  A     +I KK  F GDG F     E    E+ +DGY
Sbjct: 878  PDIGYLRIAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922


>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical protein
            C05C10.2a protein.
          Length = 1551

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +3

Query: 21   PSFSRLPXAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 155
            P    L  A     +I KK  F GDG F     E    E+ +DGY
Sbjct: 878  PDIGYLRIAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,546,794
Number of Sequences: 27780
Number of extensions: 265287
Number of successful extensions: 703
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)