Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_J20
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    27   1.4  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   4.2  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   9.8  

>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 18  ITQKNTLYYISSFHFFITN*LHILFSSSVLIVNDFRAFGISL 143
           + QK T  +  S +F  T  + +  S+S L+  DFRAF I L
Sbjct: 8   LVQKGTRSFFPSLNFCYTRNI-MSVSASSLVPKDFRAFRIGL 48


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 142 REIPKALKSLTIKTDEEKSMCS*LVIKK 59
           R   + LK   +  DEEK MC+   IKK
Sbjct: 224 RNTDERLKMAQVNCDEEKEMCNHFHIKK 251


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 351 QQKL*QKFDR-DKITNHLSNEATKTXNVVIKFIKYLVT*YSVRKYVHPPHFYENV 512
           QQKL +     DK++ HLS     T N +IK   Y +   +V ++  P   +E +
Sbjct: 781 QQKLDESLRHSDKVSQHLSLRDEGTPNHLIKHNSYFLL-PTVSRHYRPITIFEAI 834


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,851,358
Number of Sequences: 5004
Number of extensions: 31014
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)