Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_J18
         (447 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   2.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.1  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   8.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   8.1  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 309 YSFIIHRTVTTILTQNIGIHQCLNI 235
           Y  +++ TVTTIL   +GI   L I
Sbjct: 136 YRALLYYTVTTILAAIVGIVMVLII 160


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 148 CSVILDVLVLEDFLSLQLTIPMCLENGVSG 59
           C+ +L  L + D     L +PM L   +SG
Sbjct: 76  CNYLLVSLAVSDLCVALLVMPMALLYEISG 105


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 51  HLQPLTPFSKHI 86
           H+ PLTPF + I
Sbjct: 147 HIGPLTPFPRFI 158


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 51  HLQPLTPFSKHI 86
           H+ PLTPF + I
Sbjct: 388 HIGPLTPFPRFI 399


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,707
Number of Sequences: 438
Number of extensions: 1314
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)