Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_J16
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...   150   1e-37
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    31   0.14 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    29   0.73 
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   3.0  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    25   6.8  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    25   9.0  

>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score =  150 bits (364), Expect = 1e-37
 Identities = 68/151 (45%), Positives = 97/151 (64%)
 Frame = +1

Query: 178 LLDFNQKLDINLLDNIVGCLYSAVGDQQRVAQDILTALKEHPDAWTRVDTILEYSQNQET 357
           +L F+++LD+ LLD +V   Y  VG +Q+ AQ +LT  + HPDAW++  +ILE S+  +T
Sbjct: 4   ILAFDRELDVALLDRVVQTFYQGVGAEQQQAQQVLTQFQAHPDAWSQAYSILEKSEYPQT 63

Query: 358 KYYALQILXQVILTXWKILPXNQCXXXXXXXXXXXXXNSSXPVTMESNKVYLKKLNMILI 537
           KY AL +L ++I T WK+LP  Q              NSS    ++  K +L KL++ L+
Sbjct: 64  KYIALSVLDKLITTRWKMLPKEQRLGIRNYIVAVMIKNSSDETVLQQQKTFLNKLDLTLV 123

Query: 538 QVLKREWPHNWETFISDIVGASKTNESLCQN 630
           Q+LK+EWPHNW  FI +IV ASKTN SLC+N
Sbjct: 124 QILKQEWPHNWPNFIPEIVQASKTNLSLCEN 154


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 32   RKLFSRVLYNGEE*MWINQNNFDFG--KKGTN*LNKYILPEW 151
            R+L     Y  E  M+IN N FDFG  +K +  +N  ILP W
Sbjct: 2069 RELIPEFFYLSE--MFINGNGFDFGSRQKESTPINDVILPPW 2108


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -1

Query: 301 DVPSKQSVYPEQHVVDPQQQN 239
           DV +K S + E+H++DP+++N
Sbjct: 603 DVNTKDSSFAERHIIDPEKRN 623


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 363 IFSFLILRIFKYCINTSPSIRMFLQSSQYILSNTLLIP 250
           I SF++L +F+  +    S  +FL +   ++S  LLIP
Sbjct: 505 IISFILLAVFRPFVGFKNSFCVFLVALTRVVSFALLIP 542


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 100 FWKKGNKLTK*IYFTRMATLEQQASKLLDFNQ 195
           FW+KG++  + +   + A L QQ    L F+Q
Sbjct: 277 FWQKGSRTKRPVMKIKDAHLPQQGISCLSFSQ 308


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 348 ILRIFKYCINTSPSIRMFLQSSQYILSNTLLIPNS 244
           ++RIF   +NT  S+     SS+ I  NT  +PN+
Sbjct: 257 VVRIFDSHVNTRYSMSWDCYSSKNIPKNTEALPNN 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,991
Number of Sequences: 5004
Number of extensions: 45060
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)