Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_J16
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1345| Best HMM Match : IBN_N (HMM E-Value=0.84)                     40   0.002
SB_34970| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.021
SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10)            31   0.77 
SB_44612| Best HMM Match : DUF738 (HMM E-Value=3.9)                    29   4.1  
SB_3394| Best HMM Match : DUF1203 (HMM E-Value=2.7)                    29   4.1  
SB_47318| Best HMM Match : DUF738 (HMM E-Value=1.4)                    29   4.1  
SB_37370| Best HMM Match : PHD (HMM E-Value=4.2)                       29   4.1  
SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_10348| Best HMM Match : DUF1610 (HMM E-Value=0.74)                  29   4.1  
SB_58405| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_37195| Best HMM Match : Na_Ca_ex (HMM E-Value=0.56)                 28   7.2  
SB_42810| Best HMM Match : Beach (HMM E-Value=0)                       27   9.5  
SB_57943| Best HMM Match : SCP (HMM E-Value=5.70048e-42)               27   9.5  

>SB_1345| Best HMM Match : IBN_N (HMM E-Value=0.84)
          Length = 746

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +1

Query: 379 LXQVILTXWKILPXNQCXXXXXXXXXXXXXNSSXPVTMESNKVYLKK-LNMILIQVLKRE 555
           L  V    W  +  N C             N + P++ E    +LK+ L  ++ +V KRE
Sbjct: 92  LMNVFRFNWGSMQQNDCAVFKQRVMSLLV-NGTKPMSEEP--YHLKESLARLVAEVAKRE 148

Query: 556 WPHNWETFISDIVG 597
           WP +WE F+SD+ G
Sbjct: 149 WPQSWENFLSDLNG 162


>SB_34970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 866

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 1/110 (0%)
 Frame = +1

Query: 268 AQDILTALKEHPDAWTRVDTILEYSQNQETKYYALQILXQVILTXW-KILPXNQCXXXXX 444
           A+ +L    +   AW      L  SQN     YA+ I   +I   W    P ++      
Sbjct: 20  AEHVLHNFGQQSGAWHHCVYFLSNSQNHYVLMYAISIFENLINKQWIGTQPSDKTEIRSF 79

Query: 445 XXXXXXXXNSSXPVTMESNKVYLKKLNMILIQVLKREWPHNWETFISDIV 594
                   + + P  + +      KL  +++ + + +WPH +  F+SDI+
Sbjct: 80  LKQYLLSQHKALPAFVRN------KLAKVIVDMGRLDWPHFYPNFLSDIM 123


>SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10)
          Length = 1378

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 184 DFNQKLDINLLDNIVGCLYSAVGDQQRVAQDILTALKEHPDAWTRVD 324
           D++ K+D+ L DN+   L    G   RV  D L  ++EH  A   +D
Sbjct: 132 DYDLKVDLPLRDNLEEALEDVEGVLDRVLDDTLHGVQEHDYARITID 178


>SB_44612| Best HMM Match : DUF738 (HMM E-Value=3.9)
          Length = 297

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 184 DFNQKLDINLLDNIVGCLYSAVGDQQRVAQDILTALKEHPDAWTRVD 324
           D++ K+D+ L DN+   L    G   RV  D L  ++ H  A   +D
Sbjct: 131 DYDLKVDLPLRDNLEEALEDVEGVLDRVLDDTLRGVQGHDYARITID 177


>SB_3394| Best HMM Match : DUF1203 (HMM E-Value=2.7)
          Length = 365

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 184 DFNQKLDINLLDNIVGCLYSAVGDQQRVAQDILTALKEHPDAWTRVD 324
           D++ K+D+ L DN+   L    G   RV  D L  ++ H  A   +D
Sbjct: 54  DYDLKVDLPLRDNLEEALEDVEGVLDRVLDDTLRGVQGHDYARITID 100


>SB_47318| Best HMM Match : DUF738 (HMM E-Value=1.4)
          Length = 312

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 184 DFNQKLDINLLDNIVGCLYSAVGDQQRVAQDILTALKEHPDAWTRVD 324
           D++ K+D+ L DN+   L    G   RV  D L  ++ H  A   +D
Sbjct: 132 DYDLKVDLPLRDNLEEALEDVEGVLDRVLDDTLRGVQGHDYARITID 178


>SB_37370| Best HMM Match : PHD (HMM E-Value=4.2)
          Length = 332

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 184 DFNQKLDINLLDNIVGCLYSAVGDQQRVAQDILTALKEHPDAWTRVD 324
           D++ K+D+ L DN+   L    G   RV  D L  ++ H  A   +D
Sbjct: 21  DYDLKVDLPLRDNLEEALEDVEGVLDRVLDDTLRGVQGHDYARITID 67


>SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 328 LYQHESKHQDVPSKQSVYPEQHVVDPQQQNINSQQ 224
           L+QH+ +HQ     Q  +  QH    QQQ    QQ
Sbjct: 296 LHQHQQQHQYQQQHQHQHQHQHQQQQQQQQQQQQQ 330


>SB_10348| Best HMM Match : DUF1610 (HMM E-Value=0.74)
          Length = 637

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 184 DFNQKLDINLLDNIVGCLYSAVGDQQRVAQDILTALKEHPDAWTRVD 324
           D++ K+D+ L DN+   L    G   RV  D L  ++ H  A   +D
Sbjct: 131 DYDLKVDLPLRDNLEEALEDVEGVLDRVLDDTLRGVQGHDYARITID 177


>SB_58405| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 757

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 331 LEYSQNQETKYYALQILXQVILTXWKILP 417
           L Y  + ET +Y L+ +  V    WK+LP
Sbjct: 483 LPYFMDDETVHYVLEAVDMVATHGWKLLP 511


>SB_37195| Best HMM Match : Na_Ca_ex (HMM E-Value=0.56)
          Length = 298

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -3

Query: 251 PTAEYKQPTMLSNKLMSNF*LKSKSLDACCS--KVAILVKYIYLV 123
           PT E   P++  N+L S   LKS+++ +  S  K+A  VK +Y+V
Sbjct: 18  PTREAILPSIRKNRLASVLALKSRAIRSTVSIFKMAFSVKALYVV 62


>SB_42810| Best HMM Match : Beach (HMM E-Value=0)
          Length = 667

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 83  NQNNFDFG-KKGTN*LNKYILPEW 151
           NQNNFD G K+    L+  ILP W
Sbjct: 45  NQNNFDLGAKQNGERLDHVILPPW 68


>SB_57943| Best HMM Match : SCP (HMM E-Value=5.70048e-42)
          Length = 632

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = +2

Query: 41  FSRVLYNGEE*M--WINQ-NNFDFGKKG 115
           F +   NGEE +  W N+ NN+DFGK G
Sbjct: 62  FGQADINGEEAVDKWYNEVNNYDFGKPG 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,782,128
Number of Sequences: 59808
Number of extensions: 293278
Number of successful extensions: 767
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)