Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_J09
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  87   1e-17
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              72   4e-13
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   2e-11
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   64   1e-10
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   6e-08
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            46   4e-05
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   8e-04
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              40   0.001
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      31   1.1  
SB_6422| Best HMM Match : Gemini_AC4_5 (HMM E-Value=6.7)               28   5.7  

>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 49/140 (35%), Positives = 77/140 (55%)
 Frame = +3

Query: 186 NINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPAAKLMVLASQ 365
           +I A +  A  ++++ GP GM+KM+++   +  VT+D  TI+  ++V+H  AKLMV  S+
Sbjct: 35  HILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQIAKLMVELSK 94

Query: 366 MQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSLICNEI 545
            QD E+GDGT  V+VL+G            G+    IADGYE A    LE + S+  N  
Sbjct: 95  SQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAKIALEHMDSIADNFP 154

Query: 546 KDTKNIKEVTKGIVAAIMSK 605
            D  N + + +  +  + SK
Sbjct: 155 VDKDNKESLIQTAMTTLGSK 174


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 36/88 (40%), Positives = 57/88 (64%)
 Frame = +3

Query: 117 PGVPQMLKDGARMFSGLEEAVYXNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSD 296
           PG+  +LK+G     G+ + +  NI+AC+  A +VR+  GP GM+K+I++   K  +++D
Sbjct: 639 PGII-LLKEGTDASQGIPQLI-SNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATISND 696

Query: 297 AGTIIRELDVEHPAAKLMVLASQMQDAE 380
             TII  LD+ HPAAK +V  ++ QDAE
Sbjct: 697 GATIINLLDIVHPAAKTLVDIAKSQDAE 724


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 33/88 (37%), Positives = 50/88 (56%)
 Frame = +3

Query: 285 VTSDAGTIIRELDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVT 464
           +T+D   I+RE+ V+HPAAK M+  S+ QD EVGDGT  VI+L+G             + 
Sbjct: 1   MTNDGNAILREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMH 60

Query: 465 TSEIADGYERALDKCLEILPSLICNEIK 548
            ++I   Y  A+D  ++IL   I  E++
Sbjct: 61  PTQIIAAYRLAMDDMIDILKQQIREELQ 88


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
 Frame = +3

Query: 219 VRSAYGPNGMNKMI--INHIDKQFVTSDAGTIIRELDVEHPAAKLMVLASQMQDAEVGDG 392
           V+S  GP GM+K++          VT+D  TI++ + +++PAAK++V  S++QD EVGDG
Sbjct: 36  VKSTLGPKGMDKILQSFGQNGNIQVTNDGATILKSIGIDNPAAKILVELSKVQDDEVGDG 95

Query: 393 TNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSLICNEIKDTKNIKEV 572
           T  V VL+              +    I  G+ +++    + L +   +   D +  +E 
Sbjct: 96  TTSVTVLTSELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAVDHSSDPEKFRED 155

Query: 573 TKGIVAAIMSKQ 608
              I    +S +
Sbjct: 156 LMNIARTTLSSK 167


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 28/78 (35%), Positives = 43/78 (55%)
 Frame = +3

Query: 315 ELDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYER 494
           ++ V+HPAAK M+  S+ QD EVGDGT  VI+L+G             +  ++I   Y  
Sbjct: 208 KIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRL 267

Query: 495 ALDKCLEILPSLICNEIK 548
           A+D  ++IL   I  E++
Sbjct: 268 AMDDMIDILKQQIREELQ 285


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 16/75 (21%), Positives = 41/75 (54%)
 Frame = +3

Query: 189 INACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPAAKLMVLASQM 368
           +  C+ F + ++ ++GPNG++ M+ +      +T+    I+  L + +P  +++V A++ 
Sbjct: 6   LQTCQNFERILKKSFGPNGLDVMLRSSSGNILITNSGSMILESLTMGNPTERMIVEAARS 65

Query: 369 QDAEVGDGTNFVIVL 413
                G G ++ I++
Sbjct: 66  LSGRTGSGASYFIII 80


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 22/90 (24%), Positives = 39/90 (43%)
 Frame = +3

Query: 309 IRELDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGY 488
           ++   ++HP A L+   +  QD   GDGT   +++ G            G+    + +G+
Sbjct: 166 VQNSQIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGF 225

Query: 489 ERALDKCLEILPSLICNEIKDTKNIKEVTK 578
           E A  K LE+L  +  +   D   +  V K
Sbjct: 226 EVAKKKALEVLEEVKVSREMDRDTLINVAK 255


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
 Frame = +3

Query: 168 EEAVYXNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTI--IRELDVE-HPA 338
           +E    NI A K  A ++R++ GP GM+KMI        +T+D  TI  I  +D+E  P 
Sbjct: 23  QEIRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATIKLIDTVDLEGGPV 82

Query: 339 AKLMVLASQMQDAEVGD 389
            K +V A+ M     G+
Sbjct: 83  GKPVVPAALMNRPTRGE 99


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/83 (21%), Positives = 34/83 (40%)
 Frame = +3

Query: 360 SQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSLICN 539
           S++QD EVGDGT  V VL+              +    I  G+ +++    + L +   +
Sbjct: 3   SKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAVD 62

Query: 540 EIKDTKNIKEVTKGIVAAIMSKQ 608
              D +  ++    I    +S +
Sbjct: 63  HSSDPEKFRDDLMNIARTTLSSK 85


>SB_6422| Best HMM Match : Gemini_AC4_5 (HMM E-Value=6.7)
          Length = 442

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 483 GYERALDKCLEILPSLICNEIKDTKNIKEVTKGIVAAIMSKQYGHEQFISELVTKA 650
           G E  +D CL+ +  L+  ++ D +    V  G+V   +S+ Y   Q+  +   KA
Sbjct: 153 GLEMEVDVCLDKVKHLVPTQLYDKRPSYLVYAGLVFVALSQPYMQHQYGKDWARKA 208


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,889,350
Number of Sequences: 59808
Number of extensions: 331363
Number of successful extensions: 698
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)