Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_J09
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 178 2e-45
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 91 4e-19
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 88 4e-18
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 86 2e-17
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 85 3e-17
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 85 3e-17
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 66 1e-11
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 60 1e-09
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 60 2e-09
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 55 5e-08
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 39 0.003
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 37 0.010
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 37 0.013
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 37 0.013
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 178 bits (434), Expect = 2e-45
Identities = 87/179 (48%), Positives = 118/179 (65%), Gaps = 2/179 (1%)
Frame = +3
Query: 120 GVPQMLKDGARMFSGLEEAVYXNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDA 299
G+ MLK+G R SGL+EAV NI ACK+ + R++ GPNGMNKM+INH+DK FVT+DA
Sbjct: 10 GIQSMLKEGYRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFVTNDA 69
Query: 300 GTIIRELDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIA 479
TI+ EL+++HPAAKL+VLA++ Q E+GDG N I +G R+G+ SEI
Sbjct: 70 ATIVNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEII 129
Query: 480 DGYERALDKCLEILPSLI--CNEIKDTKNIKEVTKGIVAAIMSKQYGHEQFISELVTKA 650
GY +A+ K +EIL L+ +E D +N EV + AA+ SKQ+G E+ I LVT A
Sbjct: 130 SGYTKAVSKAVEILEQLVETGSETMDVRNKDEVISRMRAAVASKQFGQEEIICSLVTDA 188
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 91.5 bits (217), Expect = 4e-19
Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 1/162 (0%)
Frame = +3
Query: 132 MLKDGARMFSGLEEAVYXNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTII 311
+L D + SG + + NI A K A +R+ GP M KM+++ VT+D I+
Sbjct: 7 VLSDSLKRESG-SKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTNDGNAIL 65
Query: 312 RELDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYE 491
RELDV HPAAK M+ S+ QD EVGDGT VIVL+G + I Y
Sbjct: 66 RELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAYI 125
Query: 492 RALDKCLEILPSLICN-EIKDTKNIKEVTKGIVAAIMSKQYG 614
+AL+ + +L + + +I D + + K + + Q+G
Sbjct: 126 KALEDSIAVLDKIAMSIDINDRSQVLGLVKSCIGTKFTSQFG 167
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 88.2 bits (209), Expect = 4e-18
Identities = 43/155 (27%), Positives = 82/155 (52%)
Frame = +3
Query: 186 NINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPAAKLMVLASQ 365
N+ AC+ + V+++ GP G++KM+++ I +T+D TI+R L+VEHPAAK++V ++
Sbjct: 24 NVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAE 83
Query: 366 MQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSLICNEI 545
+QD EVGDGT V++++ R + + I GY A+ + + + + ++
Sbjct: 84 LQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEEKLVTKV 143
Query: 546 KDTKNIKEVTKGIVAAIMSKQYGHEQFISELVTKA 650
+ + + + G F + LV +A
Sbjct: 144 EKLGKVPLINCAKTSMSSKLISGDSDFFANLVVEA 178
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 85.8 bits (203), Expect = 2e-17
Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 7/180 (3%)
Frame = +3
Query: 132 MLKDGARMFSGLEEAVYXNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVT--SDAGT 305
+LK+G G + V NINAC VR+ GP GM+K+I H DK VT +D T
Sbjct: 11 LLKEGTDTSQGKAQLV-SNINACTAVGDVVRTTLGPRGMDKLI--HDDKGSVTISNDGAT 67
Query: 306 IIRELDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADG 485
I++ LD+ HPAAK++V ++ QD+EVGDGT V++L+ GV +
Sbjct: 68 IMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRS 127
Query: 486 YER----ALDKCLEILPSLICNEIKDTKNIKEVTKGIVAAIMSKQYGHE-QFISELVTKA 650
Y A+ K E+ S+ +++ K + + K + SK G E +F + +V A
Sbjct: 128 YRTASTLAIAKVKELAVSIEGKSVEEKKGL--LAKCAATTLSSKLIGGEKEFFATMVVDA 185
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 85.4 bits (202), Expect = 3e-17
Identities = 44/148 (29%), Positives = 85/148 (57%), Gaps = 2/148 (1%)
Frame = +3
Query: 168 EEAVYXNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPAAKL 347
E+ + NIN+ + + +VR++ GP GM+KMI + +T+D TI+ +++V PAAK+
Sbjct: 27 EDIRFANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKM 86
Query: 348 MVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPS 527
+V S+ QD+ GDGT V+V++G G+ + I+D +A K ++IL +
Sbjct: 87 LVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAIDILTA 146
Query: 528 L-ICNEIKDTKN-IKEVTKGIVAAIMSK 605
+ + E+ D + +K + + + ++S+
Sbjct: 147 MAVPVELTDRDSLVKSASTSLNSKVVSQ 174
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 85.4 bits (202), Expect = 3e-17
Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 1/161 (0%)
Frame = +3
Query: 171 EAVYXNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPAAKLM 350
+A NI A K A+ +RS+ GP GM+KM+ +T+D TI+ ++DV++ AKLM
Sbjct: 28 DAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILEQMDVDNQIAKLM 87
Query: 351 VLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSL 530
V S+ QD E+GDGT V+V++G G+ IA+GYE A +E L +
Sbjct: 88 VELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERI 147
Query: 531 ICNEIKDTKNIKEVTKGIVAAIMSKQYGH-EQFISELVTKA 650
D N + + + + + SK ++ ++E+ KA
Sbjct: 148 AQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKA 188
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 66.5 bits (155), Expect = 1e-11
Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 4/165 (2%)
Frame = +3
Query: 123 VPQMLKDGARMFSGLEEAVYXNINACKQFAQSVRSAYGPNGMNKMI--INHIDKQFVTSD 296
+ ++ KD A G E A + + V+S GP GM+K++ VT+D
Sbjct: 3 IDKIFKDDASEEKG-ERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTND 61
Query: 297 AGTIIRELDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEI 476
TI++ L +++PAAK++V S++QD EVGDGT V+VL+G + I
Sbjct: 62 GATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTI 121
Query: 477 ADGYERALDKCLE--ILPSLICNEIKDTKNIKEVTKGIVAAIMSK 605
GY R +C +L +I N+ K ++ K + + SK
Sbjct: 122 IAGY-RMASECARNALLKRVIDNKDNAEKFRSDLLKIAMTTLCSK 165
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 60.1 bits (139), Expect = 1e-09
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 1/147 (0%)
Frame = +3
Query: 174 AVYXNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPAAKLMV 353
A++ INA K ++S GP G KM++ +T D T+++E+ +++P A ++
Sbjct: 18 ALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIA 77
Query: 354 LASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSLI 533
+ QD GDGT ++ G G+ + DG+E A L+ L +
Sbjct: 78 RTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDTFK 137
Query: 534 CNEIKDTKNIKEVTKGIV-AAIMSKQY 611
+ + KE+ K + + +K Y
Sbjct: 138 TPVVMGDEPDKEILKMVARTTLRTKLY 164
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 59.7 bits (138), Expect = 2e-09
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 1/147 (0%)
Frame = +3
Query: 174 AVYXNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPAAKLMV 353
A++ INA K ++S GP G KM++ +T D T+++E+ +++P A ++
Sbjct: 18 ALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIA 77
Query: 354 LASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSLI 533
+ QD GDGT ++ G G+ + DG+E A L+ L +
Sbjct: 78 RTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDNFK 137
Query: 534 CNEIKDTKNIKEVTKGIV-AAIMSKQY 611
+ + KE+ K + + +K Y
Sbjct: 138 TPVVMGDEVDKEILKMVARTTLRTKLY 164
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 54.8 bits (126), Expect = 5e-08
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Frame = +3
Query: 318 LDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERA 497
+DV++ AKLMV S+ QD E+GDGT V+V++G G+ IA+GYE A
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60
Query: 498 LDKCLEILPSLICNEIKDTKNIKEVTKGIVAAIMSKQYGH-EQFISELVTKA 650
+E L + D N + + + + + SK ++ ++E+ KA
Sbjct: 61 SRVAVEHLERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKA 112
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 38.7 bits (86), Expect = 0.003
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 4/122 (3%)
Frame = +3
Query: 204 QFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPA----AKLMVLASQMQ 371
+ A V GP G N ++ + + +D T+ RE+++E P AKL+ A+
Sbjct: 73 KLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKT 132
Query: 372 DAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSLICNEIKD 551
+ GDGT +VL+ G I G E+ + L L+ E++D
Sbjct: 133 NDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVNEL-KLMSKEVED 191
Query: 552 TK 557
++
Sbjct: 192 SE 193
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 37.1 bits (82), Expect = 0.010
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Frame = +3
Query: 204 QFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPA----AKLMVLASQMQ 371
+ A V GP G N ++ + + +D T+ RE+++E P AKL+ A+
Sbjct: 73 KLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAASKT 132
Query: 372 DAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSLICNEIKD 551
+ GDGT +VL+ G I G E+ K L + E++D
Sbjct: 133 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKT-TKALVAELKKMSKEVED 191
Query: 552 TK 557
++
Sbjct: 192 SE 193
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 36.7 bits (81), Expect = 0.013
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Frame = +3
Query: 204 QFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPA----AKLMVLASQMQ 371
+ A V GP G N ++ + + +D T+ RE+++E P AKL+ A+
Sbjct: 77 KLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKT 136
Query: 372 DAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSLICNEIKD 551
+ GDGT +VL+ G I G E+ K L + E++D
Sbjct: 137 NDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTA-KALVTELKKMSKEVED 195
Query: 552 TK 557
++
Sbjct: 196 SE 197
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 36.7 bits (81), Expect = 0.013
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Frame = +3
Query: 204 QFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPA----AKLMVLASQMQ 371
+ A V GP G N ++ + + +D T+ RE+++E P AKL+ A+
Sbjct: 77 KLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKT 136
Query: 372 DAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSLICNEIKD 551
+ GDGT +VL+ G I G E+ K L + E++D
Sbjct: 137 NDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTA-KALVTELKKMSKEVED 195
Query: 552 TK 557
++
Sbjct: 196 SE 197
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,357,106
Number of Sequences: 28952
Number of extensions: 227897
Number of successful extensions: 520
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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