Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_J08
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 34 0.11
02_01_0382 - 2772378-2773544 31 1.1
11_01_0389 - 2937242-2939476,2939556-2939666,2941254-2941450,294... 30 1.4
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297... 29 3.2
02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356 29 3.2
04_04_1388 - 33179270-33180679 29 4.2
03_06_0753 + 36015026-36015256,36015780-36015885,36016132-360161... 29 4.2
02_05_0100 - 25821606-25822349 29 4.2
06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258 28 5.6
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 28 5.6
08_01_0708 + 6261524-6262249,6262776-6262925,6263760-6264065 28 7.4
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198... 28 7.4
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 27 9.8
01_07_0357 + 43032552-43033034,43034054-43034383,43035210-430353... 27 9.8
>01_05_0687 + 24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/79 (29%), Positives = 31/79 (39%)
Frame = +1
Query: 328 APSSPPSVTDRFNHYWQRFILLPLEQATQYTVIRPQEPKTEASLLSIHQEQVQPLVEPRP 507
AP SP F Y +LLP Q T +R + TE + Q+ VE
Sbjct: 1091 APCSPDRAPPGFETYKSSQLLLPSPSLAQTTNVRQDQSVTEPVSVIEEAPQLLHSVEVMG 1150
Query: 508 QHQNLLPPYEVKISSRSDG 564
H + +PP S +DG
Sbjct: 1151 VHMDAVPPLLPSSESGADG 1169
>02_01_0382 - 2772378-2773544
Length = 388
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Frame = +2
Query: 260 PYPQRQPQSHQNSQHV--PTNQDSTRRHHHQASQTDSTTTGNDLSCYHLNKRLS----TL 421
P P R P+S P++ +++RRHH Q + ++T H + LS T+
Sbjct: 15 PSPSRLPRSASGKAPTSPPSSSNASRRHHQQPPRASASTPATPAPSRHHLRSLSISCMTI 74
Query: 422 SSDRKSP 442
+D SP
Sbjct: 75 RTDDDSP 81
>11_01_0389 -
2937242-2939476,2939556-2939666,2941254-2941450,
2941543-2941633
Length = 877
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 376 QRFILLPLEQATQYTVI--RPQEPKTEASLLSIHQEQVQPLVEPRPQHQN 519
++ +LLP Q Q + RP P+T LL ++ P+V P P QN
Sbjct: 104 EKVMLLPFSQDVQKFICIKRPTLPETSFELLREVYPEITPVVLPSPVEQN 153
>06_03_0551 -
22027441-22028224,22029015-22029344,22029510-22029778,
22030530-22031453,22037761-22038360,22040049-22040267
Length = 1041
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 243 RCNSIIHIHNDNHKATRTHNTSPQTRILRAVIT-TKRHRPIQPLLA 377
RC SII++ K + H+ + +R+ T T RHR QP +A
Sbjct: 763 RCTSIINLPTSITKLKKLHDATAVSRLFELRETWTSRHRGQQPAVA 808
>02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356
Length = 444
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 153 QTASSAFRLLPPGGHADHSSPHGPDGLRSGRCNSIIHIHNDNHKATRT 296
++A+++FRL+P G + DH P + R+G C + H+ KA R+
Sbjct: 344 ESAAASFRLVPTG-NGDHIHPRESNDTRAGLCVDETY-HDLPEKARRS 389
>04_04_1388 - 33179270-33180679
Length = 469
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 421 VIRPQEPKTEASLLSIHQEQVQPLVEPRPQHQNL 522
V P A LL+ H + V+PLV P P H +L
Sbjct: 41 VTTPGNAAQLAPLLAAHPDSVRPLVLPFPSHPSL 74
>03_06_0753 +
36015026-36015256,36015780-36015885,36016132-36016192,
36016278-36016573,36016654-36016793,36016880-36016954,
36017044-36017134,36017677-36017880,36018409-36018453,
36018745-36018830
Length = 444
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 260 PYPQRQPQS-HQNSQHVPTNQDSTRRHHH 343
P Q QP+ HQ S H ++D+ ++HHH
Sbjct: 58 PSNQNQPKKGHQRSHHA-VDKDAAKKHHH 85
>02_05_0100 - 25821606-25822349
Length = 247
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 183 PPGGHADHSSPHGPDGLRSGRCNSIIHIHN 272
PP GH H PH G ++ R +++ I N
Sbjct: 108 PPRGHPWHEGPHPQHGFQASRSSAVGPIRN 137
>06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258
Length = 700
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 186 PGGHADHSSPHGPDGLRSGRCNSII 260
P GHA+H+ HGP GR +++
Sbjct: 46 PQGHAEHAQGHGPVEFPGGRVPALV 70
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 126 NYQEY*WHHHVDHFKHENPIKF 61
++Q+Y HHH ++H+N I F
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHF 171
>08_01_0708 + 6261524-6262249,6262776-6262925,6263760-6264065
Length = 393
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +3
Query: 192 GHADHSSPHGPDGLRSGRCNSIIHIHNDNHKATRTHNTSPQTRILRAVITTKRHRPIQPL 371
GH H H G G +S H H +H + TSP+ +V T RHR + +
Sbjct: 188 GHV-HVHTHATHGHAHGHVHSHGHGHGHSHGSAPAAATSPED---ASVAETIRHRVVSQV 243
Query: 372 L 374
L
Sbjct: 244 L 244
>04_04_0613 +
26617677-26617963,26618726-26618786,26619598-26619832,
26619958-26620196,26620493-26620744,26620844-26621024,
26621810-26621898,26622200-26622273,26622365-26622443
Length = 498
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
Frame = +2
Query: 254 HHPYPQRQPQSHQ---NSQH 304
HH Y QRQPQ Q NSQH
Sbjct: 46 HHQYVQRQPQPQQTPHNSQH 65
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 257 HPYPQRQPQSHQNSQHVPTNQDSTRRHHHQ 346
HP PQ Q Q QH+ QD +H HQ
Sbjct: 144 HPPPQHQ----QQQQHLDAMQDLQHQHQHQ 169
>01_07_0357 +
43032552-43033034,43034054-43034383,43035210-43035325,
43035589-43035679,43035790-43035860,43036202-43036258,
43036809-43036860,43037139-43037170,43037686-43037753,
43038148-43038353
Length = 501
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 288 WLCGCRCGYG*WSYIVHFEGHLVREVSYDLHGH 190
+ CGC CG+G W+ + LV + D++ H
Sbjct: 412 YYCGCICGHGVWNRKNPWSQGLVCTIDLDVNLH 444
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,765,638
Number of Sequences: 37544
Number of extensions: 383718
Number of successful extensions: 1278
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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