Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_J08
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   1.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   1.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.8  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 222 PDGLRSGRCNSIIHIHNDNHKATRTHNTSPQTRILRAVIT 341
           PD        S  HI   +++  R H++   TR +R  IT
Sbjct: 96  PDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTIT 135


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 222 PDGLRSGRCNSIIHIHNDNHKATRTHNTSPQTRILRAVIT 341
           PD        S  HI   +++  R H++   TR +R  IT
Sbjct: 96  PDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTIT 135


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 263  YPQRQPQSHQNSQHVPTNQD-STRRHHHQASQTD 361
            YP+  P +H    H+P ++  S     ++A Q +
Sbjct: 1474 YPRINPDNHNEKLHIPKDKSVSVLSRENEAGQKE 1507


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 222 PDGLRSGRCNSIIHIHNDNHKATRTHNTSPQTRILRAVIT 341
           PD        S  HI   +++  R H++   TR +R  IT
Sbjct: 35  PDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTIT 74


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +2

Query: 254 HHPYPQRQPQSHQNSQHV--PTNQDSTRRHHHQASQT 358
           +HP+    P  HQ+  H   PT       HHH  +Q+
Sbjct: 326 YHPHRGSSPH-HQHGNHTMGPT-MGPPHHHHHHQTQS 360


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 257 HPYPQRQPQSHQNSQHVPTNQ 319
           HP  Q+Q Q HQ     P +Q
Sbjct: 222 HPRQQQQAQQHQGVVTSPLSQ 242


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 546 DFDFVWRQKILVLRSWFNQRLDL 478
           D DF  R  + V +SW   RLD+
Sbjct: 29  DMDF--RVDMFVRQSWIESRLDM 49


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 196 MQIIAHLTDQMAFEVD 243
           M+ ++H TD+M F+ D
Sbjct: 181 MESLSHTTDEMIFQWD 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,176
Number of Sequences: 438
Number of extensions: 3607
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)