Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_J08
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g01750.1 68416.m00112 ankyrin repeat family protein contains ... 32 0.29
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot... 32 0.29
At5g13590.1 68418.m01572 expressed protein 30 1.2
At3g04590.2 68416.m00489 DNA-binding family protein contains a A... 30 1.5
At3g04590.1 68416.m00488 DNA-binding family protein contains a A... 30 1.5
At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacu... 29 2.0
At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacu... 29 2.0
At1g52560.1 68414.m05933 26.5 kDa class I small heat shock prote... 29 2.0
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2) 29 2.7
At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containi... 29 3.5
At5g19190.1 68418.m02285 expressed protein predicted protein, Ar... 28 4.7
At4g37650.1 68417.m05325 short-root transcription factor (SHR) 28 4.7
At2g20880.1 68415.m02461 AP2 domain-containing transcription fac... 28 4.7
At3g24870.1 68416.m03119 expressed protein 28 6.2
At3g09710.1 68416.m01150 calmodulin-binding family protein low s... 28 6.2
At3g43583.1 68416.m04636 hypothetical protein 27 8.2
At2g35910.1 68415.m04408 zinc finger (C3HC4-type RING finger) fa... 27 8.2
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 27 8.2
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 27 8.2
At1g60220.1 68414.m06782 Ulp1 protease family protein contains P... 27 8.2
At1g55050.1 68414.m06288 expressed protein ; expression supporte... 27 8.2
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 27 8.2
At1g03630.1 68414.m00343 protochlorophyllide reductase C, chloro... 27 8.2
>At3g01750.1 68416.m00112 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 664
Score = 32.3 bits (70), Expect = 0.29
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +2
Query: 254 HHPYPQRQPQSHQNSQHVPTNQDS--TRRHHHQASQTDSTTTGNDLSCYHLNKRLSTLSS 427
H P ++QP +N+ + + T+ Q S ++ + L + NKR + S
Sbjct: 504 HWPRVKKQPGHSKNNSDISIISTTLETQETPVPLRQRFSKSSTSSLDPPNNNKRTLAVRS 563
Query: 428 DRKSPRQKPHCFPSIKNRSS 487
++ SPR K F S+++RSS
Sbjct: 564 NQSSPRAKKKRFGSVRSRSS 583
>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 652
Score = 32.3 bits (70), Expect = 0.29
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +2
Query: 269 QRQPQSHQNSQHVPTNQDSTRRHHHQASQTDSTTTGNDLSCYHLNKRLSTLSSDRKSP 442
Q+Q Q QH +QD HH+ +++ S N S H +KR + S+D SP
Sbjct: 30 QQQQLQQQQQQHKNNHQDDDDHHHNNNNRSGSK---NPNSLNHRSKRRNPNSNDGDSP 84
>At5g13590.1 68418.m01572 expressed protein
Length = 1190
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Frame = +3
Query: 147 RSQTASSAFRLLPP---GGHADHSSPHGPDGLRSGRCNSIIHIHNDNHKATRTHNTSP 311
RS +SS+FR GH D S P G + R +S H R HN+ P
Sbjct: 958 RSDGSSSSFRNRSQEEFSGHTDFSHRRSPSGYKVERMSSPDHSGYSREMVVRRHNSPP 1015
>At3g04590.2 68416.m00489 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 411
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 251 LHHPYPQRQPQSHQNSQHVPTNQDSTRRHHHQASQTDST-TTGN 379
LHH + Q+Q Q Q P + HHH + +T +TGN
Sbjct: 15 LHHLHQQQQQQQQQQRLTSPYFHHQLQHHHHLPTTVATTASTGN 58
>At3g04590.1 68416.m00488 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 308
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 251 LHHPYPQRQPQSHQNSQHVPTNQDSTRRHHHQASQTDST-TTGN 379
LHH + Q+Q Q Q P + HHH + +T +TGN
Sbjct: 15 LHHLHQQQQQQQQQQRLTSPYFHHQLQHHHHLPTTVATTASTGN 58
>At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacum,
EMBL:AB009883
Length = 918
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/64 (26%), Positives = 25/64 (39%)
Frame = +2
Query: 254 HHPYPQRQPQSHQNSQHVPTNQDSTRRHHHQASQTDSTTTGNDLSCYHLNKRLSTLSSDR 433
+H P + PQS SQ P Q H H S + + + Y + R + + R
Sbjct: 51 NHQQPHQHPQSQSQSQPQPHLQALPHPHSHSHSHSPLAAAASASAPYEVESR-TVVKVAR 109
Query: 434 KSPR 445
PR
Sbjct: 110 SEPR 113
>At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacum,
EMBL:AB009883
Length = 918
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/64 (26%), Positives = 25/64 (39%)
Frame = +2
Query: 254 HHPYPQRQPQSHQNSQHVPTNQDSTRRHHHQASQTDSTTTGNDLSCYHLNKRLSTLSSDR 433
+H P + PQS SQ P Q H H S + + + Y + R + + R
Sbjct: 51 NHQQPHQHPQSQSQSQPQPHLQALPHPHSHSHSHSPLAAAASASAPYEVESR-TVVKVAR 109
Query: 434 KSPR 445
PR
Sbjct: 110 SEPR 113
>At1g52560.1 68414.m05933 26.5 kDa class I small heat shock
protein-like (HSP26.5-P) contains Pfam profile: PF00011
Hsp20/alpha crystallin family; identified in Scharf,
K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
Length = 232
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 425 SDRKSPRQKPHCFPSIKNRSSLWLNQD 505
S++KSPRQ FP + R SLW N D
Sbjct: 60 SEKKSPRQN---FPRRRGRKSLWRNTD 83
>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
Length = 638
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 287 HQNSQHVPTNQDST-RRHHHQASQTDSTTTGNDLSCYHLNKRLS-TLSS 427
HQ+ Q + T Q S HHH SQT+ T + S H + LS +LSS
Sbjct: 198 HQHHQQISTWQSSPDHHHHHHNSQTEIGTVHVENSGGHGGQGLSLSLSS 246
>At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1141
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 230 PSKWTM*-LHHPYPQRQPQSHQNSQHVPTNQDSTRRHHHQASQTDSTTTGNDLSC 391
PSK M L H + Q QSHQ+ Q + +Q + + Q Q D + ++C
Sbjct: 1044 PSKHHMSSLSHQFHQSIHQSHQHHQSIYQSQHAATHYPSQNHQCDPELSHTQMAC 1098
>At5g19190.1 68418.m02285 expressed protein predicted protein,
Arabidopsis thaliana
Length = 154
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +2
Query: 260 PYPQRQPQSHQNSQHVP-TNQDSTRRHHHQASQTDSTTTGNDLSCYHLNKR 409
PY +Q QS +P ++Q R HHHQ S+ H N++
Sbjct: 57 PYMYQQEQSKGTGVFIPKSSQPRRRPHHHQKQGRYSSFNAKQQHSLHQNRQ 107
>At4g37650.1 68417.m05325 short-root transcription factor (SHR)
Length = 531
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 281 QSHQNSQHVPTNQDSTRRHHHQASQTDSTTTGNDLSCYHLN 403
Q Q S + TNQ S S+T +TTTG+ + YH N
Sbjct: 11 QQQQQSDSIITNQSSL-------SRTSTTTTGSPQTAYHYN 44
>At2g20880.1 68415.m02461 AP2 domain-containing transcription
factor, putative similar to AP2 domain containing
protein RAP2.4 [Arabidopsis thaliana] GI:2281633
Length = 336
Score = 28.3 bits (60), Expect = 4.7
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +1
Query: 307 PHKPGFYAPSSPPSVTDRFNHYWQRFILLPLEQATQYTVIRPQEP--KTEASLLSIH-QE 477
P+ YA PP+ T + F L P Q Q + P +P + + ++S Q+
Sbjct: 71 PYLVSSYATPQPPTTTTCSVSF--PFYLPPAIQ-NQQRFLHPNDPSGQRQQQMISFDPQQ 127
Query: 478 QVQPLVEPRPQHQNLLPPY 534
QVQP V + Q Q L Y
Sbjct: 128 QVQPYVAQQQQQQQHLLQY 146
>At3g24870.1 68416.m03119 expressed protein
Length = 1841
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 272 RQPQSHQNSQHVPTNQDSTRRHHHQASQTDSTTTGN 379
++P S+ N+ VPT + T H S TTGN
Sbjct: 837 KRPDSNINAGSVPTRRVRTASRHRVVSPFGCATTGN 872
>At3g09710.1 68416.m01150 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 454
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/87 (22%), Positives = 40/87 (45%)
Frame = +2
Query: 227 WPSKWTM*LHHPYPQRQPQSHQNSQHVPTNQDSTRRHHHQASQTDSTTTGNDLSCYHLNK 406
W +W P+ + + + + + ++ST R+ Q +T ++ N L+
Sbjct: 262 WLERWMA--GRPWESSEKEQNTTNNDNSSVKNSTNRNS-QGGETAKSSNRNKLNSSTKPN 318
Query: 407 RLSTLSSDRKSPRQKPHCFPSIKNRSS 487
S S+ ++PR+K SIK++SS
Sbjct: 319 TPSASSTATRNPRKKRPIPSSIKSKSS 345
>At3g43583.1 68416.m04636 hypothetical protein
Length = 100
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/37 (29%), Positives = 14/37 (37%)
Frame = +3
Query: 207 SSPHGPDGLRSGRCNSIIHIHNDNHKATRTHNTSPQT 317
SSP P + C+ H H NH+ H T
Sbjct: 51 SSPEPPPHCQGFHCHRSFHCHRSNHRRRSNHAAGATT 87
>At2g35910.1 68415.m04408 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 zinc finger
protein ATL6 [Arabidopsis thaliana] GI:4928403; contains
Pfam profile PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 217
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = +2
Query: 311 TNQDSTRRHHHQASQTDSTTTGNDLSCYHLNKRLSTLSSDRKSPRQKPHC 460
TNQDSTR HHH G D ++ L S+ K P C
Sbjct: 100 TNQDSTRIHHHHHHVIIDVVPGLDEDTIQSYPKI--LYSEAKGPTTASCC 147
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 884
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/68 (30%), Positives = 25/68 (36%)
Frame = +1
Query: 331 PSSPPSVTDRFNHYWQRFILLPLEQATQYTVIRPQEPKTEASLLSIHQEQVQPLVEPRPQ 510
PS PP TD ++ Y+Q P+ TQ P P S H P P PQ
Sbjct: 14 PSGPPPPTDPYHQYYQHQARPPVPPPTQ-----PGGPPAWYSNQFHHPHSPSPPPPPPPQ 68
Query: 511 HQNLLPPY 534
P Y
Sbjct: 69 WGPPSPHY 76
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/68 (30%), Positives = 25/68 (36%)
Frame = +1
Query: 331 PSSPPSVTDRFNHYWQRFILLPLEQATQYTVIRPQEPKTEASLLSIHQEQVQPLVEPRPQ 510
PS PP TD ++ Y+Q P+ TQ P P S H P P PQ
Sbjct: 14 PSGPPPPTDPYHQYYQHQARPPVPPPTQ-----PGGPPAWYSNQFHHPHSPSPPPPPPPQ 68
Query: 511 HQNLLPPY 534
P Y
Sbjct: 69 WGPPSPHY 76
>At1g60220.1 68414.m06782 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 604
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 162 SSAFRLLPPGGHADHSSPHGPDGLRSGRCN 251
S+ +RLLP G A+HS+ GL+ + N
Sbjct: 231 SNGWRLLPDVGKAEHSAKQFDSGLKESKGN 260
>At1g55050.1 68414.m06288 expressed protein ; expression supported
by MPSS
Length = 914
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/52 (25%), Positives = 29/52 (55%)
Frame = +2
Query: 278 PQSHQNSQHVPTNQDSTRRHHHQASQTDSTTTGNDLSCYHLNKRLSTLSSDR 433
P+S + + P N++ + R H A+ + T +D S +H+ + +++ SD+
Sbjct: 809 PKSKKTTTSKPRNRERSARIKHSANANNKTPGESDNS-FHVKEAITSKPSDQ 859
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 251 LHHPYPQRQPQSHQNSQHVPTNQDSTRRHHHQASQTDS 364
L H Q+Q Q Q QH Q + +HHHQ Q S
Sbjct: 737 LQHHQQQQQQQQQQQQQH----QLTQLQHHHQQQQQAS 770
>At1g03630.1 68414.m00343 protochlorophyllide reductase C,
chloroplast / PCR C / NADPH-protochlorophyllide
oxidoreductase C (PORC) identical to SP:O48741
protochlorophyllide reductase C, chloroplast precursor
(EC 1.3.1.33) (PCR C) (NADPH-protochlorophyllide
oxidoreductase C) (POR C) [Arabidopsis thaliana]
Length = 401
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +2
Query: 305 VPTNQDSTRRHHHQASQTDSTTTGNDLSCYHLNKRLSTLSSDRKSPRQKPHCFPSIK 475
+P+ + AS ++T TG+ S + +++STL + ++ RQKP I+
Sbjct: 10 LPSTISIQKEGKFNASLKETTFTGSSFSNHLRAEKISTLLTIKEQRRQKPRFSTGIR 66
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,851,871
Number of Sequences: 28952
Number of extensions: 294764
Number of successful extensions: 1126
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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