Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_J01
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.) 112 2e-25
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 31 0.62
SB_26719| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_58305| Best HMM Match : Band_41 (HMM E-Value=4.8e-08) 29 2.5
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042) 29 2.5
SB_12433| Best HMM Match : RVT_1 (HMM E-Value=0.00019) 29 4.4
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34) 28 7.6
SB_5047| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.18) 28 7.6
>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 112 bits (270), Expect = 2e-25
Identities = 57/96 (59%), Positives = 66/96 (68%)
Frame = +2
Query: 149 AAAKDEISQHEKEYLEILAAVKGSDKEKRLASQFIAKFFNSFPTLSEQAIEAQFDLCEDD 328
+A E QH EY ILAAVKG+ EK+LAS FI +FF FP L E AI+A DLCED+
Sbjct: 143 SALTGEGVQHSDEYSAILAAVKGTLGEKKLASSFITRFFKYFPKLQEHAIDAMLDLCEDE 202
Query: 329 DVAIRKQAIKDLPVLCKEHKXHTQRIADILAQLLQS 436
D +RKQAIK LP LCK + H RIAD+L QLLQS
Sbjct: 203 DNLLRKQAIKGLPELCKANVEHLPRIADVLTQLLQS 238
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 31.5 bits (68), Expect = 0.62
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 98 KMAGDNIXKLYKNYDILAAAKDEISQHEKEYLEILAAVKGSDKEKR 235
K A D +L + D L K++I + EK E+ +A +DKEKR
Sbjct: 596 KRAADAEDELQQTEDELNRLKNDIQEKEKRISELESAFDAADKEKR 641
>SB_26719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 30.7 bits (66), Expect = 1.1
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 14/169 (8%)
Frame = +2
Query: 113 NIXKLYKNYDILAAAKDEISQHEKEYLEILAAVKGSDKE--KRLASQFIAKFFN----SF 274
N YK+Y +L+A+ S E+E+LE + V+ + L + K + S+
Sbjct: 63 NFFHKYKHYIVLSAS----SNTEEEHLEWIGLVESKVRLLISYLENNEYIKLAHVNPKSY 118
Query: 275 -PTLSEQAIEAQFDLCEDDDVAIRKQAIKDLPV----LCKEHKXHTQRIADILAQLLQSE 439
P SE + QFD+ + D RKQ + LP L K+ + A+ L +
Sbjct: 119 GPLDSEGKCQYQFDVRDSDVYKHRKQLNQFLPPGVFRLKKKSLQQPEDKANTSKIDLSLD 178
Query: 440 DSTEINVVTNSLVTILK--SDPKGALSGI-FSQIHHNTXGELPNEIVTQ 577
DS+ + + T+S+ + P A SG+ ++ T G PN + TQ
Sbjct: 179 DSSNLEICTDSIPDSKQDTEKPTTAESGVNGNKTTTQTDGTTPNPVATQ 227
>SB_58305| Best HMM Match : Band_41 (HMM E-Value=4.8e-08)
Length = 275
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +2
Query: 110 DNIXKLYKNYDILAAAKDEISQHEKEYLEILAAVKGS----DKEKRLASQ 247
+NI K K D++ A + ++ EKEY +L KG D +K + Q
Sbjct: 45 ENIQKTAKGIDLMVAVAEHLNLDEKEYFGLLYDHKGEKYWLDPQKEIKKQ 94
>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
Length = 4607
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +2
Query: 374 CKEHKXHTQRIADILAQLLQSEDSTEINVVTNSLVTILKSDPKGALSGIFSQIHHNTXGE 553
C + T+ + DIL ++ SED + + + +L+S+ + + Q+ N E
Sbjct: 3446 CIDSNQDTEVMPDILQKISLSEDERLLTLAYPIIYRVLRSEKEAFALENYDQVLSNKIDE 3505
Query: 554 LPNEIV 571
PN ++
Sbjct: 3506 FPNLVL 3511
>SB_12433| Best HMM Match : RVT_1 (HMM E-Value=0.00019)
Length = 1234
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +2
Query: 83 VKGHKKMAGDNIXKLYKNYDILAAAKDEISQHEKEYLEILAAVKGSDKEKRLASQFIAKF 262
V HK +AGD I + +D +S H + E L +KG +L + KF
Sbjct: 789 VATHKHLAGDEIGS--ERLRDSKNLEDVLSSHASVFKEDLGTLKGIRASIQLKVDAVPKF 846
Query: 263 FNSFP 277
F + P
Sbjct: 847 FKARP 851
>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
Length = 1691
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 320 EDDDVAIRKQAIKDLPVLCKEHKXHTQRIADI 415
+DDDV + + + D+PV H T R D+
Sbjct: 1133 DDDDVILLESPLNDIPVNTSGHPFETLRTLDV 1164
>SB_5047| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.18)
Length = 297
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +2
Query: 431 QSEDSTEINVVTNSLVTILKSDPKGALSGIFSQIHHNTXGELPNEIVTQRCIKFLSSKIX 610
QS DS++ + TNS + LK+ P G + + + + T F +S I
Sbjct: 198 QSHDSSDTSHATNSKIDGLKTTPNGVIPDSKEETFNTSIASKSEWSETGSFDDFSASDIE 257
Query: 611 QLRTEISPNE 640
Q R E + +E
Sbjct: 258 QNRKESNVSE 267
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,421,178
Number of Sequences: 59808
Number of extensions: 329247
Number of successful extensions: 817
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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