SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I23
         (353 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P51425 Cluster: 60S ribosomal protein L39; n=9; Poaceae...    56   1e-07
UniRef50_Q4N5K7 Cluster: 60S ribosomal protein L39, putative; n=...    54   5e-07
UniRef50_A0DH83 Cluster: Chromosome undetermined scaffold_50, wh...    54   9e-07
UniRef50_A0D4U2 Cluster: Chromosome undetermined scaffold_38, wh...    54   9e-07
UniRef50_A0BVU9 Cluster: Chromosome undetermined scaffold_130, w...    54   9e-07
UniRef50_Q96EH5 Cluster: 60S ribosomal protein L39-like; n=113; ...    50   1e-05
UniRef50_UPI0001509BE0 Cluster: hypothetical protein TTHERM_0052...    45   3e-04
UniRef50_UPI00006CB3D9 Cluster: Ribosomal L39 protein; n=1; Tetr...    45   3e-04
UniRef50_P13005 Cluster: 50S ribosomal protein L39e; n=10; Archa...    37   0.11 
UniRef50_Q01CG7 Cluster: Chromosome 03 contig 1, DNA sequence; n...    34   0.61 
UniRef50_Q8YDQ0 Cluster: ALDEHYDE DEHYDROGENASE; n=1; Brucella m...    33   1.9  
UniRef50_Q8SQP8 Cluster: 60S ribosomal protein L39; n=1; Encepha...    33   1.9  
UniRef50_A7D3F5 Cluster: Ribosomal protein L39e; n=1; Halorubrum...    32   3.2  
UniRef50_Q4SBY5 Cluster: Chromosome 2 SCAF14661, whole genome sh...    31   4.3  
UniRef50_UPI00015BAD96 Cluster: LSU ribosomal protein L39E; n=1;...    31   5.7  
UniRef50_A0RW53 Cluster: Ribosomal protein L39; n=2; Thermoprote...    31   7.5  
UniRef50_UPI0000D99F63 Cluster: PREDICTED: similar to 60S riboso...    30   9.9  
UniRef50_A0QZK6 Cluster: Major facilitator superfamily protein; ...    30   9.9  

>UniRef50_P51425 Cluster: 60S ribosomal protein L39; n=9;
           Poaceae|Rep: 60S ribosomal protein L39 - Zea mays
           (Maize)
          Length = 51

 Score = 56.4 bits (130), Expect = 1e-07
 Identities = 23/28 (82%), Positives = 24/28 (85%)
 Frame = +2

Query: 101 PFLSWVRMRTGNTIRYNAKRRHWRRTKL 184
           P   W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 22  PIPYWIRMRTDNTIRYNAKRRHWRRTKL 49


>UniRef50_Q4N5K7 Cluster: 60S ribosomal protein L39, putative; n=1;
           Theileria parva|Rep: 60S ribosomal protein L39, putative
           - Theileria parva
          Length = 79

 Score = 54.4 bits (125), Expect = 5e-07
 Identities = 26/63 (41%), Positives = 38/63 (60%)
 Frame = +2

Query: 2   LHFVXDNLIVQNVGP*DVYY*RANWPKS*NKTDPFLSWVRMRTGNTIRYNAKRRHWRRTK 181
           ++F+ DN  +  +G       + +  K   +  P   W R++TGN IRYNAKRR+WRRTK
Sbjct: 18  INFI-DNFKLYTIGSVRTLTLKKHLGKKMKQNRPIPHWFRLKTGNKIRYNAKRRYWRRTK 76

Query: 182 LKL 190
           LK+
Sbjct: 77  LKV 79


>UniRef50_A0DH83 Cluster: Chromosome undetermined scaffold_50, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_50,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 93

 Score = 53.6 bits (123), Expect = 9e-07
 Identities = 22/37 (59%), Positives = 27/37 (72%)
 Frame = +2

Query: 80  KS*NKTDPFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 190
           K+  +  P  +W R RT NTIRYN+KRRHWRRTKL +
Sbjct: 56  KANKQNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 92


>UniRef50_A0D4U2 Cluster: Chromosome undetermined scaffold_38, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_38,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 131

 Score = 53.6 bits (123), Expect = 9e-07
 Identities = 22/37 (59%), Positives = 27/37 (72%)
 Frame = +2

Query: 80  KS*NKTDPFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 190
           K+  +  P  +W R RT NTIRYN+KRRHWRRTKL +
Sbjct: 94  KANKQNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 130


>UniRef50_A0BVU9 Cluster: Chromosome undetermined scaffold_130,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_130,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 137

 Score = 53.6 bits (123), Expect = 9e-07
 Identities = 22/37 (59%), Positives = 27/37 (72%)
 Frame = +2

Query: 80  KS*NKTDPFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 190
           K+  +  P  +W R RT NTIRYN+KRRHWRRTKL +
Sbjct: 100 KANKQNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 136


>UniRef50_Q96EH5 Cluster: 60S ribosomal protein L39-like; n=113;
           Eukaryota|Rep: 60S ribosomal protein L39-like - Homo
           sapiens (Human)
          Length = 51

 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = +2

Query: 101 PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 190
           P   W++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 22  PIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51


>UniRef50_UPI0001509BE0 Cluster: hypothetical protein
           TTHERM_00526400; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00526400 - Tetrahymena
           thermophila SB210
          Length = 121

 Score = 45.2 bits (102), Expect = 3e-04
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +2

Query: 101 PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 190
           P  +W R ++   IRYN+KRR+WRRTKLK+
Sbjct: 91  PLPNWYRYKSDTNIRYNSKRRNWRRTKLKI 120


>UniRef50_UPI00006CB3D9 Cluster: Ribosomal L39 protein; n=1;
           Tetrahymena thermophila SB210|Rep: Ribosomal L39 protein
           - Tetrahymena thermophila SB210
          Length = 89

 Score = 45.2 bits (102), Expect = 3e-04
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +2

Query: 101 PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 190
           P  +W R ++   IRYN+KRR+WRRTKLK+
Sbjct: 59  PLPNWYRYKSDTNIRYNSKRRNWRRTKLKI 88


>UniRef50_P13005 Cluster: 50S ribosomal protein L39e; n=10;
           Archaea|Rep: 50S ribosomal protein L39e - Sulfolobus
           acidocaldarius
          Length = 51

 Score = 36.7 bits (81), Expect = 0.11
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 80  KS*NKTDPFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 190
           K+  +  P  +WV ++T   IR+N  RR+WRR  LK+
Sbjct: 15  KALKRNSPIPAWVIIKTQAEIRFNPLRRNWRRNNLKV 51


>UniRef50_Q01CG7 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
           Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
           sequence - Ostreococcus tauri
          Length = 567

 Score = 34.3 bits (75), Expect = 0.61
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +2

Query: 146 YNAKRRHWRRTKL 184
           YNAKRRHWRRTKL
Sbjct: 4   YNAKRRHWRRTKL 16


>UniRef50_Q8YDQ0 Cluster: ALDEHYDE DEHYDROGENASE; n=1; Brucella
           melitensis|Rep: ALDEHYDE DEHYDROGENASE - Brucella
           melitensis
          Length = 340

 Score = 32.7 bits (71), Expect = 1.9
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 184 ELCPSPVTPLSVISNSVSCAHPYPAEEWVCF-VSAFWP 74
           ELC     P  V+ N V+   P PA  W C  +S FWP
Sbjct: 201 ELCAEAGLPEGVL-NVVTAPGPLPARRWGCIPISTFWP 237


>UniRef50_Q8SQP8 Cluster: 60S ribosomal protein L39; n=1;
           Encephalitozoon cuniculi|Rep: 60S ribosomal protein L39
           - Encephalitozoon cuniculi
          Length = 52

 Score = 32.7 bits (71), Expect = 1.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 110 SWVRMRTGNTIRYNAKRRHWRRTKLKL 190
           +W RM   +   YN  RRHWR  KLK+
Sbjct: 25  AWKRMMKEHKGEYNRARRHWRSKKLKI 51


>UniRef50_A7D3F5 Cluster: Ribosomal protein L39e; n=1; Halorubrum
           lacusprofundi ATCC 49239|Rep: Ribosomal protein L39e -
           Halorubrum lacusprofundi ATCC 49239
          Length = 64

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 110 SWVRMRTGNTIRYNAKRRHWRRTKL 184
           +WV M+T   +  N KRR+WRR  L
Sbjct: 38  AWVMMKTDMNVTRNPKRRNWRRNDL 62


>UniRef50_Q4SBY5 Cluster: Chromosome 2 SCAF14661, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 2 SCAF14661, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 1455

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 181 LCPSPVTPLSVISNSVSCAHPYPAEEWVCFVSAFWPIC 68
           LC S   PL+V + SV C H  P  EW  + +  +  C
Sbjct: 352 LCVSEEPPLAVQNCSVPCKHQCPVSEWSSWSACLFDNC 389


>UniRef50_UPI00015BAD96 Cluster: LSU ribosomal protein L39E; n=1;
           Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
           L39E - Ignicoccus hospitalis KIN4/I
          Length = 55

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 110 SWVRMRTGNTIRYNAKRRHWRRTKLK 187
           +WV ++T   +  N  RR+WRR K+K
Sbjct: 28  AWVILKTRRRVTRNPMRRYWRRQKIK 53


>UniRef50_A0RW53 Cluster: Ribosomal protein L39; n=2;
           Thermoprotei|Rep: Ribosomal protein L39 - Cenarchaeum
           symbiosum
          Length = 52

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 101 PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 190
           P  +W+ ++T   +R N KRR WR T +++
Sbjct: 22  PVPAWIILKTRRGVRTNPKRRAWRSTDVEV 51


>UniRef50_UPI0000D99F63 Cluster: PREDICTED: similar to 60S ribosomal
           protein L39; n=2; Catarrhini|Rep: PREDICTED: similar to
           60S ribosomal protein L39 - Macaca mulatta
          Length = 102

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 101 PFLSWVRMRTGNTIRYNAK 157
           P   W++M+TG+ IRYN+K
Sbjct: 22  PIPQWIQMKTGDKIRYNSK 40


>UniRef50_A0QZK6 Cluster: Major facilitator superfamily protein;
           n=1; Mycobacterium smegmatis str. MC2 155|Rep: Major
           facilitator superfamily protein - Mycobacterium
           smegmatis (strain ATCC 700084 / mc(2)155)
          Length = 439

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 163 TPLSVISNSVSCAHPYPAEEWVCFVSAFWPICALII 56
           TP+ V +   S  H +PA  W+  ++A   +C L++
Sbjct: 380 TPMIVTAMVASAGHSWPAPAWLALLAAVSLLCVLVL 415


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,363,816
Number of Sequences: 1657284
Number of extensions: 3487364
Number of successful extensions: 8029
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8027
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11514999177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -