Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I23
         (353 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31985.1 68417.m04549 60S ribosomal protein L39 (RPL39C)            56   9e-09
At2g25210.1 68415.m03017 60S ribosomal protein L39 (RPL39A)            56   9e-09
At3g02190.1 68416.m00196 60S ribosomal protein L39 (RPL39B) simi...    54   3e-08
At5g42825.1 68418.m05217 expressed protein                             27   2.7  

>At4g31985.1 68417.m04549 60S ribosomal protein L39 (RPL39C)
          Length = 51

 Score = 55.6 bits (128), Expect = 9e-09
 Identities = 22/28 (78%), Positives = 24/28 (85%)
 Frame = +2

Query: 101 PFLSWVRMRTGNTIRYNAKRRHWRRTKL 184
           P   W+R+RT NTIRYNAKRRHWRRTKL
Sbjct: 22  PIPHWIRLRTDNTIRYNAKRRHWRRTKL 49


>At2g25210.1 68415.m03017 60S ribosomal protein L39 (RPL39A) 
          Length = 44

 Score = 55.6 bits (128), Expect = 9e-09
 Identities = 22/28 (78%), Positives = 24/28 (85%)
 Frame = +2

Query: 101 PFLSWVRMRTGNTIRYNAKRRHWRRTKL 184
           P   W+R+RT NTIRYNAKRRHWRRTKL
Sbjct: 15  PIPHWIRLRTDNTIRYNAKRRHWRRTKL 42


>At3g02190.1 68416.m00196 60S ribosomal protein L39 (RPL39B) similar
           to ribosomal protein L39 GB:P51424 [Arabidopsis
           thaliana]
          Length = 51

 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 21/28 (75%), Positives = 24/28 (85%)
 Frame = +2

Query: 101 PFLSWVRMRTGNTIRYNAKRRHWRRTKL 184
           P  +W+R+RT N IRYNAKRRHWRRTKL
Sbjct: 22  PIPNWIRLRTDNKIRYNAKRRHWRRTKL 49


>At5g42825.1 68418.m05217 expressed protein
          Length = 97

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = -2

Query: 208 NTFTSLQLELCPSPVTPLSVISNSVSCAHPYPAEEWVCFVSAFWPICA-LIINVLWADIL 32
           +T+ +  +   P+ +    V S+S S    +P  +  CF   FWP+ + L++N  +AD  
Sbjct: 26  STYKNFPMIAVPNNLGFCPVSSSSFSGDDRFPYGK-SCFHKRFWPLVSLLVVNQFYADCF 84

Query: 31  NNQVV-XNKVQ 2
           +  V+  NK Q
Sbjct: 85  DILVLFFNKSQ 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,845,773
Number of Sequences: 28952
Number of extensions: 79418
Number of successful extensions: 175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)