Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I20
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031...    45   5e-05
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255...    42   5e-04
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746...    36   0.025
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071...    36   0.033
12_01_0109 + 853043-853426,853653-853787,853866-854138                 33   0.23 
05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948     29   2.2  
04_04_0466 + 25433678-25434007,25434118-25434176,25434345-254344...    29   3.8  

>05_06_0234 -
           26602660-26602728,26602814-26602988,26603077-26603120,
           26603204-26603381,26603468-26603652,26603737-26603801,
           26603985-26604066,26604342-26604434,26605096-26605191,
           26605312-26605355,26605467-26605530
          Length = 364

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 23/64 (35%), Positives = 31/64 (48%)
 Frame = +3

Query: 318 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 497
           H + + SL P VR+R+  LR +Q +  D+EAKF+ E  A               R  IVN
Sbjct: 46  HTDVLESLEPKVRKRVEVLREIQSQHDDLEAKFFEERAALEAKYQKMYEPLYSKRYEIVN 105

Query: 498 GTYE 509
           G  E
Sbjct: 106 GVVE 109


>06_01_0356 +
           2557127-2557193,2557272-2557315,2557433-2557528,
           2559259-2559351,2559450-2559540,2559617-2559678,
           2559754-2559938,2560022-2560199,2560293-2560336,
           2560440-2560635,2560728-2560745,2560955-2561005
          Length = 374

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = +3

Query: 318 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 497
           H + + +L PNVR+R+  LR +Q +  +IE KF+ E  A               R  IVN
Sbjct: 47  HTDVLEALSPNVRKRVEYLREIQGQHDEIELKFFEERAALEAKYQKLYEPLYTKRYNIVN 106

Query: 498 GTYE 509
           G  E
Sbjct: 107 GVVE 110


>01_06_0465 -
           29573972-29574110,29574300-29574343,29574434-29574602,
           29574707-29574894,29575081-29575145,29575257-29575311,
           29575502-29575594,29576035-29576130,29576259-29576302,
           29576419-29576431
          Length = 301

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +3

Query: 318 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 497
           H + + SL P VR+R+  L  +Q +  ++EAKF  E  A               R+ IV+
Sbjct: 29  HVDVLESLAPVVRKRVDVLIEIQSQHDELEAKFLEEKAALEANYQKLYGPLYSKRSEIVS 88

Query: 498 GTYE 509
           G  E
Sbjct: 89  GVLE 92


>06_03_0740 -
           24006485-24006629,24006821-24006864,24006954-24007122,
           24007226-24007413,24007572-24007634,24007992-24008084,
           24009837-24009932,24010024-24010067,24010184-24010357,
           24010764-24010974
          Length = 408

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 318 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 425
           H + + SL P+VR+R+  L  +Q +  ++E KF+ E
Sbjct: 153 HVDVLESLAPSVRKRVDVLMEIQSQHDELEVKFFEE 188


>12_01_0109 + 853043-853426,853653-853787,853866-854138
          Length = 263

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -2

Query: 339 GMPSLLHEGDL*WPLSFHYGSRHFSTGVAXVHHFRRLXLXXQTP 208
           G+P L   GD+ + L+F  G+ H  T VA    F+R+ L  Q+P
Sbjct: 129 GVPDLSEHGDV-YDLTFGLGADHPPTAVALRKEFQRIILYQQSP 171


>05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948
          Length = 508

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = -3

Query: 563 LLLFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYFTVKLGLNVD 396
           +LL  V+ PW+++F I   +  +H+K +L  K  +K    A + +   +K G+ +D
Sbjct: 454 VLLPCVLPPWLDSFPIPNAVLCLHSKINLSGKNNMKNETLA-DILVINIKTGILMD 508


>04_04_0466 +
           25433678-25434007,25434118-25434176,25434345-25434426,
           25435024-25435122,25435750-25435831,25436759-25436823,
           25437241-25438308,25438369-25438446,25438550-25438596,
           25438734-25438779,25438871-25438950,25439050-25439166,
           25439842-25439923,25440156-25440281,25440415-25440489,
           25440743-25440868,25441542-25441646
          Length = 888

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -3

Query: 425 FTVKLGLNVDKLLLKSSQGADSPTNIRG*GCHRFCMKAICDGRYHFIT 282
           FT  + L+ + LL  ++  A+  T  +  G    C++++CDG  H +T
Sbjct: 177 FTFNISLSRENLLQVAAWDANLVTPHKRMGNAGLCLESLCDGSNHNVT 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,240,640
Number of Sequences: 37544
Number of extensions: 289314
Number of successful extensions: 649
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)