Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I20
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   0.58 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   0.58 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.58 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   4.1  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.4  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 198 TSEMESAXXEXVVGSGELXQHLLKSGVTRNEMIAAIT 308
           TS+ + A      G+GE    + K+G TR   + A T
Sbjct: 33  TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT 69


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 198 TSEMESAXXEXVVGSGELXQHLLKSGVTRNEMIAAIT 308
           TS+ + A      G+GE    + K+G TR   + A T
Sbjct: 49  TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT 85


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 198 TSEMESAXXEXVVGSGELXQHLLKSGVTRNEMIAAIT 308
           TS+ + A      G+GE    + K+G TR   + A T
Sbjct: 106 TSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT 142


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 563 LLLFSVITPWVETFIIIRFICAIHN 489
           +L +  ITP ++  + I   C +HN
Sbjct: 309 VLGYKYITPLIQKHLKIHDTCGVHN 333


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 376 ELFRRSLSTLRPSFTVKY 429
           E FRR +ST+   F V+Y
Sbjct: 451 EKFRRWVSTMSRPFEVRY 468


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = +3

Query: 504 YEPNDDECLNPWRDDTEQQELARAVQNAAITXG 602
           ++P D+EC          +   R   N+ IT G
Sbjct: 199 WQPEDEECTEATAGAVVLETCQRNSNNSTITAG 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,537
Number of Sequences: 438
Number of extensions: 2766
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)