Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I20
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    43   2e-04
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta...    42   3e-04
At4g17020.2 68417.m02567 transcription factor-related contains w...    28   4.2  
At4g17020.1 68417.m02568 transcription factor-related contains w...    28   4.2  
At5g18670.1 68418.m02216 beta-amylase, putative (BMY3) / 1,4-alp...    28   5.6  
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ...    27   9.7  

>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +3

Query: 321 AEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNG 500
           ++ + +L PNVR+R+ ALR +Q +  ++EAKF  E                  R  IVNG
Sbjct: 41  SDVLENLTPNVRKRVDALRDIQSQHDELEAKFREERAILEAKYQTLYQPLYVKRYEIVNG 100

Query: 501 TYE----PNDDECLNPWRDDTEQQE 563
           T E    P DD  ++   + T +++
Sbjct: 101 TTEVELAPEDDTKVDQGEEKTAEEK 125


>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 379

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = +3

Query: 318 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 497
           H++ + +L P VR+R+  LR +Q ++ ++EAKF+ E  A               R  IVN
Sbjct: 40  HSDVLENLTPPVRKRVEFLREIQNQYDEMEAKFFEERAALEAKYQKLYQPLYTKRYEIVN 99

Query: 498 GTYE 509
           G  E
Sbjct: 100 GVVE 103


>At4g17020.2 68417.m02567 transcription factor-related contains weak
           similarity to Swiss-Prot:Q92759 TFIIH basal
           transcription factor complex p52 subunit (Basic
           transcription factor 52 kDa subunit, BTF2-p52, General
           transcription factor IIH polypeptide 4) [Homo sapiens]
          Length = 462

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +3

Query: 270 SGVTRNEMIAAITNRLH---AEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 425
           +G+T +++I  +    H   A+ + S+P NV  +IR   T  +     +A FY E
Sbjct: 349 NGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDE 403


>At4g17020.1 68417.m02568 transcription factor-related contains weak
           similarity to Swiss-Prot:Q92759 TFIIH basal
           transcription factor complex p52 subunit (Basic
           transcription factor 52 kDa subunit, BTF2-p52, General
           transcription factor IIH polypeptide 4) [Homo sapiens]
          Length = 452

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +3

Query: 270 SGVTRNEMIAAITNRLH---AEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 425
           +G+T +++I  +    H   A+ + S+P NV  +IR   T  +     +A FY E
Sbjct: 349 NGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDE 403


>At5g18670.1 68418.m02216 beta-amylase, putative (BMY3) /
           1,4-alpha-D-glucan maltohydrolase, putative almost
           identical to beta-amylase BMY3 GI:15149457 from
           [Arabidopsis thaliana]; identical to cDNA putative
           beta-amylase BMY3 (BMY3) GI:15149456
          Length = 536

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 132 HYHKEVSEILNMGTVERSGDDHTSEMESAXXEXVVGSG 245
           H+H     + N+   E S DD  SE E       +GSG
Sbjct: 490 HFHAFTVFVRNLSQFELSSDDQASEAEVEAETASIGSG 527


>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 198 CGRHQNVRRYPYLIFHSLLCD 136
           CG    VRR  YL FH   CD
Sbjct: 69  CGGKTTVRRQDYLHFHCTTCD 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,268,072
Number of Sequences: 28952
Number of extensions: 232182
Number of successful extensions: 531
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)