Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_I15
(655 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0) 42 4e-04
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10) 34 0.088
SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6) 31 0.62
SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_24587| Best HMM Match : ResIII (HMM E-Value=0.82) 29 2.5
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_27649| Best HMM Match : ResIII (HMM E-Value=0.43) 28 5.8
SB_59009| Best HMM Match : DEAD (HMM E-Value=0.87) 28 5.8
SB_41929| Best HMM Match : ResIII (HMM E-Value=1.5) 28 5.8
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1) 28 5.8
SB_3895| Best HMM Match : ResIII (HMM E-Value=1.1) 28 5.8
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) 28 7.6
>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
Length = 242
Score = 41.9 bits (94), Expect = 4e-04
Identities = 34/129 (26%), Positives = 65/129 (50%)
Frame = +2
Query: 260 IVKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCTR 439
+ ++G+VQ +AV ++ N Q+ K+K+ + G I+ E +N P+
Sbjct: 5 VFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAA----GAKIVALPECFNSPYG---- 52
Query: 440 EKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILXXDEKHSDILWNTAVVISDTGNV 619
Q + ++AE G ++ L E+A + IV + + + L+NT++ +GN+
Sbjct: 53 -TQYFKDYAEEIP-GESSNMLAEVAKETGAYIVGGSIP-ERASNRKLYNTSLSYDPSGNL 109
Query: 620 IGKHRKNHI 646
+GKHRK H+
Sbjct: 110 MGKHRKIHL 118
>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 40.7 bits (91), Expect = 0.001
Identities = 34/129 (26%), Positives = 64/129 (49%)
Frame = +2
Query: 251 PPXIVKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAF 430
P + ++G+VQ +AV ++ N Q+ K+K+ + G I+ E +N P+
Sbjct: 4 PILVFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAA----GAKIVALPECFNSPYG- 54
Query: 431 CTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILXXDEKHSDILWNTAVVISDT 610
Q + ++AE G ++ L E+A + IV + + + L+NT++ +
Sbjct: 55 ----TQYFKDYAEEIP-GESSNMLAEVAKETGAYIVGGSIP-ERASNGKLYNTSLSYDPS 108
Query: 611 GNVIGKHRK 637
GN++GKHRK
Sbjct: 109 GNLMGKHRK 117
>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
Length = 128
Score = 34.3 bits (75), Expect = 0.088
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +2
Query: 461 FAESAED--GPTTTFLRELAIKYAMVIVSSILXXDEKHSDILWNTAVVISDTGNVIGKHR 634
F + AE+ G ++ L E+A + IV + + + L+NT++ +GN++GKHR
Sbjct: 12 FKDYAEEIPGESSNMLAEVAKETGAYIVGGSIP-ERASNGKLYNTSLSYDPSGNLMGKHR 70
Query: 635 KNHI 646
K H+
Sbjct: 71 KIHL 74
>SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6)
Length = 949
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 230 AKDEQTRPPXIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 367
A D + P VK H + +PT++P+ E + + +++K+ ++ +V
Sbjct: 762 AHDHRNNPSLAVKAQTYHHYLCIPTEKPIEEWRPSELWHKLDRLAEV 808
>SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1206
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 230 AKDEQTRPPXIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 367
AKD + P VK H + +P ++P+ E + + + +K+ ++ +V
Sbjct: 823 AKDHRNNPRLAVKAQTYHHYLCIPAEKPIEEWRPSELGHKLDRLAEV 869
>SB_24587| Best HMM Match : ResIII (HMM E-Value=0.82)
Length = 250
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 230 AKDEQTRPPXIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 367
A D + P VK H + +PT++P+ E + + + +K+ ++ +V
Sbjct: 177 AHDHRNNPRLAVKAQTYHHYLCIPTEKPIEEWRPSELGHKLDRLAEV 223
>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -1
Query: 421 GHVPQLLETDDVNTLLAGNIDDFLDFIENCFLLLVDW 311
G VP + +NTLL GN D F NC LL W
Sbjct: 723 GLVPYWTKLFGINTLLVGNARDSHLFCRNCSGLLPYW 759
>SB_27649| Best HMM Match : ResIII (HMM E-Value=0.43)
Length = 802
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 230 AKDEQTRPPXIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 367
A D + P +VK H + +P ++P+ E + + + +K+ + +V
Sbjct: 653 AHDHRNNPRLVVKAQTYHHYLCIPAEKPIEEWRPSELAHKLDHLAEV 699
>SB_59009| Best HMM Match : DEAD (HMM E-Value=0.87)
Length = 957
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 230 AKDEQTRPPXIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 367
A D + P +VK H + +P ++P+ E + + + +K+ ++ +V
Sbjct: 542 AHDHRNNPRLVVKAQTYHHYLFIPAEKPIEEGRPSELGHKLDRLAEV 588
>SB_41929| Best HMM Match : ResIII (HMM E-Value=1.5)
Length = 773
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 230 AKDEQTRPPXIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 367
A D + P +VK H + +P ++P+ E + + + +K+ + +V
Sbjct: 624 AHDHRNNPRLVVKAQTYHHYLCIPAEKPIEEWRPSELAHKLDHLAEV 670
>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
Length = 1101
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 230 AKDEQTRPPXIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 367
A D + P +VK H + +P ++P+ E + + + +K+ ++ +V
Sbjct: 686 AHDHRNNPRLVVKAQTYHHYLFIPAEKPIEEGRPSELGHKLDRLAEV 732
>SB_3895| Best HMM Match : ResIII (HMM E-Value=1.1)
Length = 1115
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 230 AKDEQTRPPXIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 367
A D + P +VK H + +P ++P+ E + + + +K+ ++ +V
Sbjct: 749 AHDHRNNPRLVVKAQTYHHYLFIPAEKPIEEGRPSELGHKLDRLAEV 795
>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
Length = 1425
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 233 KDEQTRPPXIVKVGIVQHSIAVPTDR-PVNEQKKAIFNKVKKIIDVAGQEGVN 388
+D T P V I VP + P N+ ++A+F++V K+ ++ GQ+ V+
Sbjct: 964 QDPPTDHPNNPSEEFVHKPILVPVMKSPRNDDERALFSRVSKVKNLWGQDLVD 1016
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,902,723
Number of Sequences: 59808
Number of extensions: 397943
Number of successful extensions: 1218
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -