Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I13
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    31   0.033
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    25   3.7  
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    24   4.9  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    23   8.6  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 31.5 bits (68), Expect = 0.033
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 159 SPNIEIGRI*PPSRITP--FNPFQIPLLNTII 248
           SP  E+G + PP  I     +P ++PLLNT+I
Sbjct: 117 SPTFELGAVWPPVGIADKTIDPLEVPLLNTVI 148


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 145 SIEDYPQILKLEEYDPLQELHHL 213
           SIED   ++KLE+ DP+  + H+
Sbjct: 276 SIED-KSLIKLEDLDPVDSISHM 297


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 244 IVFNKGIWNGLNGVILEGGHILPISIFG 161
           +  +K + NG+N +++EGG  L    FG
Sbjct: 173 VALDKLLQNGVNRIMVEGGAELLAKAFG 200


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 157 YPQILKLEEYDPLQELHHLIH 219
           YP +LK+ ++D  + LH LI+
Sbjct: 622 YPTVLKIIKFDDDEVLHTLIN 642


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,088,391
Number of Sequences: 5004
Number of extensions: 14248
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)