BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P02_F_I13 (325 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe... 31 0.033 SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 25 3.7 SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual 24 4.9 SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 23 8.6 >SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe|chr mitochondrial|||Manual Length = 273 Score = 31.5 bits (68), Expect = 0.033 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%) Frame = +3 Query: 159 SPNIEIGRI*PPSRITP--FNPFQIPLLNTII 248 SP E+G + PP I +P ++PLLNT+I Sbjct: 117 SPTFELGAVWPPVGIADKTIDPLEVPLLNTVI 148 >SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pombe|chr 1|||Manual Length = 355 Score = 24.6 bits (51), Expect = 3.7 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +1 Query: 145 SIEDYPQILKLEEYDPLQELHHL 213 SIED ++KLE+ DP+ + H+ Sbjct: 276 SIED-KSLIKLEDLDPVDSISHM 297 >SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual Length = 268 Score = 24.2 bits (50), Expect = 4.9 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = -1 Query: 244 IVFNKGIWNGLNGVILEGGHILPISIFG 161 + +K + NG+N +++EGG L FG Sbjct: 173 VALDKLLQNGVNRIMVEGGAELLAKAFG 200 >SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosaccharomyces pombe|chr 3|||Manual Length = 1140 Score = 23.4 bits (48), Expect = 8.6 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = +1 Query: 157 YPQILKLEEYDPLQELHHLIH 219 YP +LK+ ++D + LH LI+ Sbjct: 622 YPTVLKIIKFDDDEVLHTLIN 642 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,088,391 Number of Sequences: 5004 Number of extensions: 14248 Number of successful extensions: 31 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 31 length of database: 2,362,478 effective HSP length: 64 effective length of database: 2,042,222 effective search space used: 87815546 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -