Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I13
         (325 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identica...    33   0.033
At4g04545.1 68417.m00665 Ulp1 protease family protein contains P...    25   8.8  
At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containi...    25   8.8  
At1g64060.1 68414.m07256 respiratory burst oxidase protein F (Rb...    25   8.8  

>At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identical
           to cytochrome c oxidase subunit 3 (GI:15215914)
           [Arabidopsis thaliana]; similar to Cytochrome c oxidase
           polypeptide III (EC 1.9.3.1) (Swiss-Prot:P92514)
           [Arabidopsis thaliana]
          Length = 265

 Score = 33.5 bits (73), Expect = 0.033
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 159 SPNIEIGRI*PPSRITPFNPFQIPLLNTII 248
           +P +EIG I PP  I   +P++IP LNT I
Sbjct: 110 APAVEIGGIWPPKGIEVLDPWEIPFLNTPI 139


>At4g04545.1 68417.m00665 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 882

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 189 PPSRITPFNPFQIP 230
           PPS I PF+PF +P
Sbjct: 628 PPSFIGPFDPFAVP 641


>At2g39090.1 68415.m04803 tetratricopeptide repeat
          (TPR)-containing protein low similarity to prediabetic
          NOD sera-reactive autoantigen [Mus musculus]
          GI:6670773, anaphase-promoting complex subunit 7 [Homo
          sapiens] GI:6180015; contains Pfam profile PF00515: TPR
          Domain
          Length = 558

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 11 DEIFHEKEHTKAKHT 55
          D +FH++EH +A HT
Sbjct: 51 DALFHQREHRRAIHT 65


>At1g64060.1 68414.m07256 respiratory burst oxidase protein F
           (RbohF) (RbohAp108) / NADPH oxidase identical to
           cytochrome b245 beta chain homolog RbohAp108
           [GI:2654868], respiratory burst oxidase protein F
           [gi:3242456], from Arabidopsis thaliana
          Length = 944

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 154 DYPQILKLEEYDPLQELHHLIHSKFP 231
           D+P+I++  EYD  + L H   +K P
Sbjct: 491 DFPRIVRATEYDYNRYLFHYFQTKQP 516


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,490,956
Number of Sequences: 28952
Number of extensions: 71901
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)