Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I11
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    58   1e-09
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    29   0.59 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   5.5  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   5.5  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    25   7.2  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    25   9.5  

>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 23/50 (46%), Positives = 35/50 (70%)
 Frame = +3

Query: 504 ACALCVGVGSYSDPAEIQGLAHFVXHMVFMGSEKYPKENEFDAFIXKXGG 653
           + A+ V +GS S+P E+ GLAHF  H++FMG++KYP ENE+  ++    G
Sbjct: 47  SAAIDVHIGSQSNPRELLGLAHFCEHLLFMGTKKYPDENEYRKYLESHNG 96


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 558 GLAHFVXHMVFMGSEKYPKENEFDAFIXKXGG 653
           G  H + H+ FMGS+KYP       F  +  G
Sbjct: 58  GCPHTLEHLCFMGSKKYPMNGILTKFAGRACG 89


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 503 SLRPLCWCGQLQRP 544
           SL  LCWCG+ ++P
Sbjct: 254 SLHYLCWCGKQEKP 267


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 165 KPEIKVLNNRSKRPVTMFHXKENVEVLPEPIKSEADK 275
           +P I+++ N  ++P+  F  +     LP PI+    K
Sbjct: 771 EPSIRIICNFCRKPIFPFSNRNECNNLPTPIQRGVSK 807


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -2

Query: 278 LFISFRFNGFREHFNILFXMEHSHWPFRTVI*HLNFGFKFRCPLKTTSF 132
           LF++F  +       +   +++  WPF+ V+  +   F F  P K  SF
Sbjct: 106 LFLAFILSLCNTRSRVAIKIQNGLWPFKIVLWFVLGIFSFFIPTKFLSF 154


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 144 FQRTPKFKPEIKVLNNRSKRPVTMFHXKENVEVLPEPI 257
           + R PK K   K  N  S  PVT ++ K+   +L EPI
Sbjct: 43  YPREPKNK---KKANKGSTAPVTFYYTKDIQYLLHEPI 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,261
Number of Sequences: 5004
Number of extensions: 41816
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)