Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I11
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7914| Best HMM Match : No HMM Matches (HMM E-Value=.)               97   8e-21
SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)                      29   2.5  

>SB_7914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 97.5 bits (232), Expect = 8e-21
 Identities = 46/86 (53%), Positives = 52/86 (60%)
 Frame = +3

Query: 396 DXNSDPESDGGKSVQSATSDHHGTTXRNDFDEXKLXACALCVGVGSYSDPAEIQGLAHFV 575
           D  SD   DG +S       H          + KL A ALC+G GS+SDP +I GLAHF+
Sbjct: 138 DDESDVSMDGDESDDEEEGPHKPEEKHAKGKDTKLAAAALCIGTGSFSDPDDIPGLAHFL 197

Query: 576 XHMVFMGSEKYPKENEFDAFIXKXGG 653
            HMVFMGSEKYP EN FDAFI K GG
Sbjct: 198 EHMVFMGSEKYPDENSFDAFIKKHGG 223



 Score = 33.5 bits (73), Expect = 0.15
 Identities = 29/130 (22%), Positives = 49/130 (37%)
 Frame = +3

Query: 102 LIKHTFAAMSKRSGFQRTPKFKPEIKVLNNRSKRPVTMFHXKENVEVLPEPIKSEADKKL 281
           L+   F  +SKR G   +      +    ++S   V+    +   + + + +     + +
Sbjct: 16  LVVTFFLPLSKRKGQSHSQSVSQSVSQSVSQS---VSQSVSQSVSQSVSQSVSQSVSQSV 72

Query: 282 YKTIRLXNGLTALLISDPSRPAVTXXXXXXXXXXXXXXDXNSDPESDGGKSVQSATSDHH 461
            + I L NGLTALLISD     VT              D + +   D  +    + SD  
Sbjct: 73  GRVITLPNGLTALLISDTD--TVTTRPPQSSSHSETDDDDSGEESGDEDEEKTESESDDD 130

Query: 462 GTTXRNDFDE 491
             T +   DE
Sbjct: 131 DKTEKYSDDE 140


>SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)
          Length = 1710

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +3

Query: 6   SCMALRNYTSINVKFFV*-IIHSKNF*ASCRVVLIKHTFAAMSKRSGFQRTPKFKPEIKV 182
           S + + NY  I+   ++   I+  N+  SCR +L+  + +  + +SG  R P + P  K+
Sbjct: 305 SSIYIDNYIYIDNYIYIDNYIYIDNYSDSCRYLLVS-SCSCRAGKSGSSRLPSWSPRQKL 363

Query: 183 LNNRS 197
            NN +
Sbjct: 364 SNNNN 368


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,627,478
Number of Sequences: 59808
Number of extensions: 320676
Number of successful extensions: 566
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)