Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I11
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    30   0.017
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    26   0.28 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.5  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 141 GFQRTPKFKPEI-KVLNNRSKRPVTMFHXKENVEVLPEPIKSEADKKLYK 287
           G++  P    EI +V N++  + V  F  K+  E+L +  K+ AD+KL K
Sbjct: 385 GWKELPNVGDEILEVENDKILQEVIKFRQKQRAEILAKEHKAAADQKLEK 434


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 158 RCPLKTTSFGHGSKCVFDQYDSAR 87
           RCPL+  SFG+  + V  +++SAR
Sbjct: 143 RCPLQFGSFGYTKRDVIYKWNSAR 166


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 411 PESDGGKSVQSATSDHHGTT 470
           P+S  G +V S  SD +GTT
Sbjct: 240 PKSVAGLNVSSRRSDMNGTT 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,798
Number of Sequences: 438
Number of extensions: 2699
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)