Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I09
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   1.8  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    26   4.1  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    26   4.1  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.4  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   5.4  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   7.2  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    25   9.5  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    25   9.5  

>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 276 STVWAQISYITSYTCNLFTI 217
           ST W  +SY+ ++TC + TI
Sbjct: 485 STYWVTLSYLCTFTCCIMTI 504


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 635 FVSAQQWVHTHANHXQGNF 579
           F S + W   H++H QGN+
Sbjct: 409 FASKKYWSRNHSSHSQGNY 427


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 434 FHMSFHLWKKHHQLFQFEKQPPVAHSMYL 348
           F  + HLW++H+ +  F   P  A  + L
Sbjct: 282 FWTASHLWRRHYDILPFNVSPTTASPIEL 310


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 320 LAPTDPSATLGTLSVPLGVVSRIEKVGGASSKGEN 424
           + PT+ SA L T++   G+ SRI  + G+S K  N
Sbjct: 333 IKPTEGSANLNTVTELTGIGSRI-AMNGSSVKASN 366


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 480  LCANXKFXISLQKIXIPYEFSPLEEAPPTFSIRETTP 370
            LCAN  F ++   I    EF P   APP  + +++TP
Sbjct: 927  LCANGDFYLAKFSILTLIEFLP-SFAPPPSNDKQSTP 962


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 407  SSKGENSYGIXIFCKDMXNLXFAHRQXNHSRRGIFEKLQQLAF 535
            SS  E + G     K + +L F H     S++GI+E  QQL F
Sbjct: 1083 SSYIEETIGYSFKNKKLLHLAFIHPSMM-SQQGIYENYQQLEF 1124


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +3

Query: 489 IIHVVVYLKNCSS*LFLCHTDFRCLH-SVILKVSLXMVGMCMNPLLS*XEW 638
           ++ +V     C    F CH +FR L+   I+ + + +   C+       EW
Sbjct: 166 VVMIVGSFIPCLHYAFACHANFRTLYIGTIIGIGVIVASTCLLDRFRQPEW 216


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 228 GYKCSS*CNLFVPIQWTNEGSPE 296
           G+KC + C L VP    N G PE
Sbjct: 432 GFKCHARCELLVPANCKN-GEPE 453


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,772
Number of Sequences: 5004
Number of extensions: 43977
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)