Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I09
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18420| Best HMM Match : No HMM Matches (HMM E-Value=.)             100   9e-22
SB_1208| Best HMM Match : GRAM (HMM E-Value=0.0034)                    92   3e-19
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_18420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score =  100 bits (240), Expect = 9e-22
 Identities = 44/97 (45%), Positives = 64/97 (65%)
 Frame = +2

Query: 353 TLSVPLGVVSRIEKVGGASSKGENSYGIXIFCKDMXNLXFAHRQXNHSRRGIFEKLQQLA 532
           T+ VPLG + R+EK+GG +S+GEN+YG+ I+CKD  NL FAH+Q NHSRR I+E++    
Sbjct: 85  TVEVPLGTIYRVEKIGGTTSRGENAYGLEIYCKDFRNLRFAHKQENHSRRLIYERI---- 140

Query: 533 FPLSHRLPMFAFSYSESFPEXGWHVYEPIAELXRMGV 643
                 +P FA+S+ + F   GW VY+   E  R+ +
Sbjct: 141 ------MPYFAYSFKDEFEYNGWDVYDAEKEFERLAI 171



 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 23/44 (52%), Positives = 32/44 (72%)
 Frame = +1

Query: 199 GDIQLLDGEKVTSVARDVTYLCPYSGPTRGVLKVTNYQLHFSTN 330
           G++ L  GEK  + A+DVTYLCP++GP RG L +TNY+L F  +
Sbjct: 36  GELALCKGEKPQATAKDVTYLCPFTGPVRGFLYITNYKLFFKAD 79


>SB_1208| Best HMM Match : GRAM (HMM E-Value=0.0034)
          Length = 1021

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 37/65 (56%), Positives = 51/65 (78%)
 Frame = +2

Query: 353 TLSVPLGVVSRIEKVGGASSKGENSYGIXIFCKDMXNLXFAHRQXNHSRRGIFEKLQQLA 532
           T+ VPLG + R+EK+GG +S+GEN+YG+ I+CKD  NL FAH+Q NHSRR I+E++   A
Sbjct: 36  TVEVPLGTIYRVEKIGGTTSRGENAYGLEIYCKDFRNLRFAHKQENHSRRLIYERIMHYA 95

Query: 533 FPLSH 547
           FP S+
Sbjct: 96  FPASN 100



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 17/29 (58%), Positives = 23/29 (79%)
 Frame = +1

Query: 244 RDVTYLCPYSGPTRGVLKVTNYQLHFSTN 330
           +DVTYLCP++GP RG L +TNY+L F  +
Sbjct: 2   KDVTYLCPFTGPVRGFLYITNYKLFFKAD 30


>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 420 SPLEEAPPTFSIRETTPSGTLNVPR 346
           SPL+ +P T S  ETTPS     PR
Sbjct: 861 SPLQSSPSTVSSVETTPSTVSTKPR 885


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,999,294
Number of Sequences: 59808
Number of extensions: 326071
Number of successful extensions: 721
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)