Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I09
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm (myotubu...    82   3e-16
Z30317-4|CAB54306.1|  378|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...    27   8.7  
AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm
           (myotubularin) family protein 1 protein.
          Length = 588

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 7/105 (6%)
 Frame = +2

Query: 356 LSVPLGVVSRIEKVG----GASSKGENSYGIXIFCKDMXNLXFAHRQXNHSRRGIFEKLQ 523
           L +PLG VSRIEKVG      + +G+++YG  I+CKD     F     +  R+ + + L 
Sbjct: 77  LDIPLGQVSRIEKVGRKTTSVAKRGDDNYGFTIYCKDYRVYRFTCNPASSDRKNVCDSLN 136

Query: 524 QLAFPLSHRLPMFAFSYSESFP---EXGWHVYEPIAELXRMGVXN 649
           + AFPLSH LPMFA  ++   P   + GW +Y    E  R+G+ N
Sbjct: 137 RYAFPLSHNLPMFASVHAAETPRLMKDGWKIYSAEKEYERLGIPN 181


>Z30317-4|CAB54306.1|  378|Caenorhabditis elegans Hypothetical
           protein T16G12.8 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 333 SVGAKVKLIVCHFQDSPRWSTVWAQISYITSYTCNLFTIQQLYISE-DMGGV 181
           ++GA   LIV  F D P    +   +  +    C+LF +Q+++ +E D  GV
Sbjct: 98  AIGASSALIVWLFVDPPETQGLLEYLIMVLRNMCSLFMMQKIHDAEMDTQGV 149


>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +2

Query: 332 DPSATLGTLSVPL-GVVSRIEKVGG-ASSKGENSYGIXIFCKDMXNLXFAHRQXNHSRRG 505
           +PSAT+G LS PL G+ +R   +     + G N  G  +F  +  +    + Q  H   G
Sbjct: 257 NPSATVGALSEPLWGIEARNAAIANHVFTVGINRVGTEVFPNEFTS---GNGQPAHKDFG 313

Query: 506 IFEKLQQLAFPLSHRLP 556
            F     +A P   R P
Sbjct: 314 HFYGSSYIAAPDGSRTP 330


>AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.6 protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 609 YTCQPXSGKLSE*LNANIGSRCDRGKASCCSFSNIPRRE*FXC 481
           YTC P + KL +    NI  R ++    CC F   P  + F C
Sbjct: 186 YTCLPQNRKLRKGRGKNIKFRTEK-VCRCCCFPFRPNPKTFKC 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,481,596
Number of Sequences: 27780
Number of extensions: 255355
Number of successful extensions: 580
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)