Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I08
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   279   2e-76
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   7.9  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   7.9  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  279 bits (685), Expect = 2e-76
 Identities = 135/182 (74%), Positives = 152/182 (83%)
 Frame = +2

Query: 32  AVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 211
           A   ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLG
Sbjct: 3   AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62

Query: 212 EKGRXIRELTSVVQKRFNIPEQSVQLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 391
           EKGR IRELT++VQKRF   E +V+LYAEKV  RGLCA+AQ ESLRYKL+ GLAVRRA Y
Sbjct: 63  EKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAY 122

Query: 392 GVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQX 571
           GVLR++ME+GA+GCEVV+SGKLR  RAKSMKF  G MIHSG P  D++++ATRHVLLRQ 
Sbjct: 123 GVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQG 182

Query: 572 VL 577
           VL
Sbjct: 183 VL 184


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 398  LRFIMESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRH 553
            + F ME   +  + ++  +L+     S K    ++I  GD  ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
 Frame = -1

Query: 496 SMYKLH*FGTLTTQLARYNNFTTTGARFHDETENTIASTTYSETSDKLVS*RFGLG--DS 323
           S+Y    +   T+ LA+YN             E  I+ST  S      V  R  LG    
Sbjct: 296 SVYSTMAYAEATSNLAKYNTIAFGNCLDEKFEEEIISSTARSFFLGDEVKKRLLLGAYSL 355

Query: 322 AKTTSSHLFSIQLY 281
           A+  SS LFS   Y
Sbjct: 356 ARMNSSDLFSKARY 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,797
Number of Sequences: 5004
Number of extensions: 47730
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)