Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_I08
(577 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28) 317 4e-87
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68) 30 1.6
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31) 29 2.1
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40) 29 3.6
SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7) 28 4.8
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_52203| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7) 27 8.3
SB_15903| Best HMM Match : Gate (HMM E-Value=6) 27 8.3
>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
Length = 240
Score = 317 bits (779), Expect = 4e-87
Identities = 155/178 (87%), Positives = 165/178 (92%)
Frame = +2
Query: 44 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 223
ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGR 64
Query: 224 XIRELTSVVQKRFNIPEQSVQLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 403
IRELTSVVQKRF PE SV+LYAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVLR
Sbjct: 65 RIRELTSVVQKRFGFPEGSVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVLR 124
Query: 404 FIMESGARGCEVVVSGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQXVL 577
FIMESGA+GCEVVVSGKLRGQRAKSMKFV GLM+H+G+P YV+TA RHV LRQ VL
Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMVHAGEPTTHYVDTAVRHVYLRQGVL 182
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = +2
Query: 128 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFNIPEQSVQLYAEKVA 307
GY+ + + S +++ A +++ ++ + +RE +QKRF E+ +Y
Sbjct: 1941 GYTARKEYSRCVTSIVLMQALVRRNLAVKRYQALREAAIGIQKRFRAKEEGKLVYLMFHI 2000
Query: 308 TRGLCAIAQA 337
RG C + Q+
Sbjct: 2001 QRGACIVIQS 2010
>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
Length = 401
Score = 29.9 bits (64), Expect = 1.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 448 WQAAWSTCQINEVCTWTHDPLW 513
W+ AW+ C + E +T++P W
Sbjct: 76 WKQAWTPCSLQETTIYTNNPPW 97
>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
Length = 976
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 442 CIWQAAWSTCQINEVCTWTHDPLWRP 519
C W + W + E WTH P RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210
>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +1
Query: 307 YSWSLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWRPW 429
Y+W L + P + ++ Y R + L C+P + W W
Sbjct: 4 YNWWLAWNPALLCLMRQYNRWLAWNPALLCNPRQYNRWLAW 44
>SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40)
Length = 580
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 297 SAYNCTDCSGMLNRFCTTEV-SSRIXRPFS-PSTLCVLVAIIMISE 166
S YNCT +G C T+V R+ + P +C ++ +I+ S+
Sbjct: 180 SGYNCTCSAGFTGNDCITQVIKERLTHSLTFPMKMCRVLPLIVFSQ 225
>SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)
Length = 383
Score = 28.3 bits (60), Expect = 4.8
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Frame = +2
Query: 98 EFLTRELAEDGYSGVEVR--VTPIR----SEIIIMATRTQSVLGEKGRXIRELTSVVQKR 259
E+L R++ D YS E +TP +IMA R QSVL ++GR +LT Q+R
Sbjct: 175 EYLQRKI-NDAYSPEEAEKNITPYSLCSYENPMIMAFRLQSVLRKRGRD--DLT-WAQQR 230
Query: 260 FNIPEQSVQLYA 295
F+ SV+ +A
Sbjct: 231 FDDLADSVEQFA 242
>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 813
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 170 EIIIMATRTQSVLGEKGRXIRELTSVVQKRFNIPEQSVQL 289
E+I + +T V+GE GR I + S R I E +
Sbjct: 399 EVIPLGAKTSRVIGEGGRSINSIRSQSGARIQIKEDKAYI 438
>SB_52203| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)
Length = 611
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 304 GYSWSLRYRPGRISKIQAYRRSRCTSCLLWCSP 402
GY+++LRY+P ++ R++R + +LW +P
Sbjct: 363 GYNYTLRYKPNTVTN----RKTRKRNNILWYNP 391
>SB_15903| Best HMM Match : Gate (HMM E-Value=6)
Length = 444
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 304 GYSWSLRYRPGRISKIQAYRRSRCTSCLLW 393
G +W +R P + + +A+R +R SC LW
Sbjct: 88 GKNWKVRASPAWVRRYRAFRHAR--SCSLW 115
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,792,127
Number of Sequences: 59808
Number of extensions: 393422
Number of successful extensions: 1134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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