Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I07
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    61   1e-10
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    27   2.0  
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb...    26   4.7  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   8.2  

>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 15/100 (15%)
 Frame = +1

Query: 145 FISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDRLXKISDWTMVQDK------------ 288
           F  P +    + WGP E      D+PY PFSKGDRL KI+DW++ Q K            
Sbjct: 5   FKLPELAPVKSAWGPPETEQIGGDIPYAPFSKGDRLGKIADWSVDQPKDGREQRGRQGAF 64

Query: 289 --KYQNKYASQ-FGAGSSYAYFHDEXESTFHLVDTTRVQK 399
             +++++Y +  +GA S + Y H E ES+F ++D   V +
Sbjct: 65  AGRFRDQYQTYGYGASSIFGYQHSEDESSFSVIDRGSVNR 104


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 71  WFKIVT*HXELRCRNTYCRPKGR*GLFHP 157
           W+  V  + ELRC+N YC    R G+  P
Sbjct: 576 WWTPVYVNQELRCKNAYCDSIQRKGIKFP 604


>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 353

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 399 AVPVISAWAGSRTAWSWCQGCTYSXWYDNIEQAT 500
           A  ++S WAG    + W Q  T   + DN   AT
Sbjct: 302 AKDIVSIWAGLPFVFVWLQHITAEVFIDNEHVAT 335


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 148 ISPIIQDNPTGWGPYEMPDQFRDMPYQ 228
           + PII  NP  W PY     FR  P Q
Sbjct: 20  LPPIILTNPLTWIPYIYRYLFRKTPRQ 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,335,799
Number of Sequences: 5004
Number of extensions: 46404
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)