Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I07
         (588 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.)             100   8e-22
SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  
SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          28   4.9  
SB_1224| Best HMM Match : bZIP_1 (HMM E-Value=8e-10)                   28   4.9  

>SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 553

 Score =  100 bits (240), Expect = 8e-22
 Identities = 47/96 (48%), Positives = 66/96 (68%), Gaps = 6/96 (6%)
 Frame = +1

Query: 133 GPMRFISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDRLXKI-SDWTMVQDKKYQ---- 297
           G  +F +P IQDNP GWGP  +P  F+D+PYQPFSK DRL K+   +T    +K +    
Sbjct: 3   GKAKFCAPEIQDNPDGWGPCSVPTAFKDIPYQPFSKADRLGKVWLVFTYTDFRKVRFVPG 62

Query: 298 NKYASQFGAGSS-YAYFHDEXESTFHLVDTTRVQKP 402
           +KY SQFG G+  ++Y+H+E E++F LVDT+R Q+P
Sbjct: 63  DKYQSQFGTGNQMFSYYHEEDETSFQLVDTSRTQRP 98


>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
 Frame = -3

Query: 565 QMHHEXS*AHHVDPTSYQAXVHVACS--MLSYXQEYVHPWHHDHAVLEPAHADMTGTAFV 392
           Q HH     HH   T+    +    S  + S  + + HP HH H      H+ +T    +
Sbjct: 320 QRHHHHPHHHHSAITTIHIIITAPSSPSISSSQRNHHHPHHHSH------HSAITNIHII 373

Query: 391 LE-*CPPGERCFHXHHGSMHKTNQRRTVMH 305
           +    PP       HH   H  +   T +H
Sbjct: 374 ITVPSPPSTSSSQRHHHHPHHHHSAITTIH 403



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
 Frame = -3

Query: 571 QLQMHHEXS*AHHVDPTSYQAXVHVACS-MLSYXQEYVHPWHHDHAVLEPAHADMTGTAF 395
           Q   HH    +HH   T+    +        S  Q Y H  HH H+ +   H  +T  + 
Sbjct: 190 QRNHHHPHHHSHHSAITNIHIIITAPSPPSTSSSQRYHHHPHHHHSAITTIHIIITAPS- 248

Query: 394 VLE*CPPGERCFHXHHGSMHKTNQRRTVMH 305
                PP       HH   H  +     +H
Sbjct: 249 -----PPSTSSSQRHHHHPHHHHSAIITIH 273



 Score = 27.9 bits (59), Expect = 6.5
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
 Frame = -3

Query: 565 QMHHEXS*AHHVDPTSYQAXVHVAC-SMLSYXQEYVHPWHHDHAVLEPAHADMTGTAFVL 389
           Q +H     HH   T+      V   +  S  Q Y H  HH H+ +   H  +T  +   
Sbjct: 30  QRNHHHPHHHHSAITTIHIITTVPSPTSTSSSQRYHHHPHHHHSAITTIHIIITAPS--- 86

Query: 388 E*CPPGERCFHXHHGSMHKTNQRRTVMH 305
              PP       HH   H  +     +H
Sbjct: 87  ---PPSTSSSQRHHHHPHHHHSAIITIH 111


>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 376  PGERCFHXHHGSMHKTNQRRTVMHTCSGTSC 284
            PG+  +  H G+    N   +V HTC  +SC
Sbjct: 2297 PGQYQWSRHRGATPSANTGPSVDHTCGNSSC 2327


>SB_1224| Best HMM Match : bZIP_1 (HMM E-Value=8e-10)
          Length = 496

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 273 NGARQEVPEQVCITVRRWFVLCI 341
           + AR    +Q+CITV+R+ +LCI
Sbjct: 116 SSARGSYTDQLCITVKRYNLLCI 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,212,372
Number of Sequences: 59808
Number of extensions: 388094
Number of successful extensions: 761
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)