Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I07
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   5.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.0  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 179 VGDLTRCQTNLGT 217
           +G LT C TNLGT
Sbjct: 264 LGFLTFCPTNLGT 276


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 496  PRERXLGKRWGQRGAP 543
            P E   G ++GQ GAP
Sbjct: 1815 PEEDQYGSQYGQYGAP 1830


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 214 DMPYQPFSKGDRLXKISDWTMVQDK 288
           D+ Y PF +   + K   WT   D+
Sbjct: 154 DVTYFPFDQQTCIMKFGSWTFNGDQ 178


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 276 HCPITYLA*SIAFAEWLIGHV 214
           H    Y   S+AFA+ L+G V
Sbjct: 77  HTATNYFVTSLAFADCLVGLV 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,217
Number of Sequences: 438
Number of extensions: 3068
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)