Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I07
         (588 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10060.1 68418.m01165 expressed protein                             29   1.7  
At3g01480.1 68416.m00072 peptidyl-prolyl cis-trans isomerase, pu...    29   1.7  
At5g44320.1 68418.m05427 eukaryotic translation initiation facto...    29   2.3  
At4g20980.1 68417.m03037 eukaryotic translation initiation facto...    29   3.0  
At1g31430.1 68414.m03849 pentatricopeptide (PPR) repeat-containi...    27   7.0  
At3g03750.2 68416.m00381 SET domain-containing protein low simil...    27   9.3  
At3g03750.1 68416.m00380 SET domain-containing protein low simil...    27   9.3  

>At5g10060.1 68418.m01165 expressed protein
          Length = 469

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +1

Query: 85  NLTX*TAMSEHVLPAEGPMRFISPIIQDNPTGWGPYE-MPDQFRDMPYQPFSKGDRLXKI 261
           N T  T    HV+P   P +F+ P + +NP  +G    MP      P  P   G++  +I
Sbjct: 381 NQTPTTQGQYHVIPNPPPPQFLKPPVMNNPYAFGNIPLMPPGLPPPPPPPHLIGNQQPQI 440

Query: 262 SDWTMVQDKK 291
                 Q  +
Sbjct: 441 PQSNSAQQSQ 450


>At3g01480.1 68416.m00072 peptidyl-prolyl cis-trans isomerase,
           putative / cyclophilin, putative / rotamase, putative
           similar to peptidyl-prolyl cis-trans isomerase,
           chloroplast precursor (40 kDa thylakoid lumen PPIase, 40
           kDa thylakoid lumen rotamase) [Spinacia oleracea]
           SWISS-PROT:O49939
          Length = 437

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 139 MRFISPIIQDNPTGWGPYEMPDQFRDMP-YQPFSKGDRLXKISDWTMVQD 285
           ++++  I +D   G+ PYE+P+++R+MP  +  +  D   KI D   ++D
Sbjct: 207 LKYVGGIEEDMVDGF-PYEVPEEYRNMPLLKGRASVDMKVKIKDNPNIED 255


>At5g44320.1 68418.m05427 eukaryotic translation initiation factor 3
           subunit 7, putative / eIF-3 zeta, putative / eIF3d,
           putative similar to initiation factor 3d [Arabidopsis
           thaliana] GI:12407755, SP|O15371 Eukaryotic translation
           initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66)
           (eIF3d) {Homo sapiens}; contains Pfam profile PF05091:
           Eukaryotic translation initiation factor 3 subunit 7
           (eIF-3)
          Length = 588

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 10/45 (22%)
 Frame = +1

Query: 169 NPTGWGPYEMPDQ----------FRDMPYQPFSKGDRLXKISDWT 273
           N  GWGP +  D             ++P+  FS+ ++L +++DWT
Sbjct: 14  NSDGWGPPDASDTSSTSVAAANLLPNVPFASFSRSEKLGRVADWT 58


>At4g20980.1 68417.m03037 eukaryotic translation initiation factor 3
           subunit 7, putative / eIF-3 zeta, putative / eIF3d,
           putative similar to initiation factor 3d [Arabidopsis
           thaliana] GI:12407755, SP|O15371 Eukaryotic translation
           initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66)
           (eIF3d) {Homo sapiens}; contains Pfam profile PF05091:
           Eukaryotic translation initiation factor 3 subunit 7
           (eIF-3)
          Length = 591

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +1

Query: 214 DMPYQPFSKGDRLXKISDWT 273
           ++P+  FS+ D+L +++DWT
Sbjct: 43  NVPFASFSRSDKLGRVADWT 62


>At1g31430.1 68414.m03849 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 570

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 319 RTVMHTCSGTSCLAPLSNHLSCXIDRLC 236
           R + H+ +    + P S H SC ID LC
Sbjct: 400 RKIFHSMTERHNVQPKSEHCSCLIDLLC 427


>At3g03750.2 68416.m00381 SET domain-containing protein low
           similarity to G9a [Homo sapiens] GI:287865; contains
           Pfam profiles PF00856: SET domain, PF05033: Pre-SET
           motif
          Length = 354

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/53 (26%), Positives = 21/53 (39%)
 Frame = -3

Query: 394 VLE*CPPGERCFHXHHGSMHKTNQRRTVMHTCSGTSCLAPLSNHLSCXIDRLC 236
           V E  P G+ C   +  +    N  R + H+C G +    L       + RLC
Sbjct: 253 VREHLPSGQACLRINIDATRIGNVARFINHSCDGGNLSTVLLRSSGALLPRLC 305


>At3g03750.1 68416.m00380 SET domain-containing protein low
           similarity to G9a [Homo sapiens] GI:287865; contains
           Pfam profiles PF00856: SET domain, PF05033: Pre-SET
           motif
          Length = 338

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/53 (26%), Positives = 21/53 (39%)
 Frame = -3

Query: 394 VLE*CPPGERCFHXHHGSMHKTNQRRTVMHTCSGTSCLAPLSNHLSCXIDRLC 236
           V E  P G+ C   +  +    N  R + H+C G +    L       + RLC
Sbjct: 237 VREHLPSGQACLRINIDATRIGNVARFINHSCDGGNLSTVLLRSSGALLPRLC 289


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,346,764
Number of Sequences: 28952
Number of extensions: 249043
Number of successful extensions: 501
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)