Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I03
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.6  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    26   5.6  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.4  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    25   7.4  
SPAC8C9.10c |||ribosome biogenesis protein Rrp14-N|Schizosacchar...    25   9.8  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -2

Query: 124  THYIMQKIYRQHTSTSYKQKLTIKSNKYLQSLTGRNNITNY 2
            THY +   YR   S      L ++S +YL       N+ +Y
Sbjct: 1450 THYGVYDAYRDFRSHYIHCSLALESPRYLDDANAFENVNSY 1490


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 374 LEKWNMFFNFQVLLIIF*QHDYKIASYLKHNTQ 472
           LE+W + FN  +L ++    DY  +  LKHN++
Sbjct: 234 LERWYVLFNITMLRLVSFNMDYYWS--LKHNSE 264


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +2

Query: 101 NFLHDIMGQTEARLACRFVCITCYIXMIFFFLCIPFCFGSRLF 229
           NFLH   G +E  L   F C+  +   + FFL   F F    F
Sbjct: 100 NFLHPFTG-SELSL---FRCLLLFFFFLLFFLSFSFSFSFLFF 138


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 115 IMQKIYRQHTSTSYKQKLTIKSNKYL 38
           IM+ + R HT+T +K+    KSN+ L
Sbjct: 343 IMEPVRRIHTATHFKEVYDNKSNRTL 368


>SPAC8C9.10c |||ribosome biogenesis protein
           Rrp14-N|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 127 LTHYIMQKIY-RQHTSTSYKQKLTIKSNK 44
           L  YI  K+Y R+HT+  +KQK +    K
Sbjct: 18  LLSYIPAKLYYREHTANQWKQKKSTLEEK 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,688
Number of Sequences: 5004
Number of extensions: 42637
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)