Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I03
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                35   0.052
SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 628

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 20/50 (40%), Positives = 29/50 (58%)
 Frame = -2

Query: 151 SASKACFRLTHYIMQKIYRQHTSTSYKQKLTIKSNKYLQSLTGRNNITNY 2
           +A K C  +T+Y +  +YR  TSTSYK  +T  +++Y   LTG     NY
Sbjct: 442 TAPKPCHPITNYYI--LYRMSTSTSYKIAITDNNDQYY--LTGLTEGANY 487


>SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 882

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
 Frame = +3

Query: 306 HLKSVTCMMHFFCKKCELYFVR-----NWKSGICSLIF 404
           HL S  C +HF    C +YF       ++ SG CS+ F
Sbjct: 723 HLASGYCSIHFASGYCSIYFASGQCSIHFASGYCSIYF 760


>SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 140 LACRFVCITCYIXMIFFFLCIPFC 211
           L CR++ I+ YI  + + + +P C
Sbjct: 25  LTCRYIVISVYIVSVLYVIGVPMC 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,149,175
Number of Sequences: 59808
Number of extensions: 277857
Number of successful extensions: 573
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)