Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I01
         (503 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   6.3  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.3  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.3  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.3  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.3  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.3  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   8.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   8.3  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 196 IRTSKKKTVVPEDKG 240
           IR  K KTVVPE  G
Sbjct: 150 IRKCKPKTVVPEVGG 164


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 161 PXNISEASISKQSEPAKKK 217
           P N+ E  ++ +SEP + K
Sbjct: 14  PYNVLERPVANESEPLEVK 32


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 161 PXNISEASISKQSEPAKKK 217
           P N+ E  ++ +SEP + K
Sbjct: 14  PYNVLERPVANESEPLEVK 32


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 161 PXNISEASISKQSEPAKKK 217
           P N+ E  ++ +SEP + K
Sbjct: 14  PYNVLERPVANESEPLEVK 32


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 161 PXNISEASISKQSEPAKKK 217
           P N+ E  ++ +SEP + K
Sbjct: 14  PYNVLERPVANESEPLEVK 32


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 161 PXNISEASISKQSEPAKKK 217
           P N+ E  ++ +SEP + K
Sbjct: 14  PYNVLERPVANESEPLEVK 32


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 393 FYINKCRIVRYFKNFSFLN 449
           F++N   I  YFK  SFL+
Sbjct: 574 FFLNVSSIPIYFKWLSFLS 592


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 393 FYINKCRIVRYFKNFSFLN 449
           F++N   I  YFK  SFL+
Sbjct: 574 FFLNVSSIPIYFKWLSFLS 592


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,632
Number of Sequences: 336
Number of extensions: 2574
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11944578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)