Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I01
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.08 |mrpl6||mitochondrial ribosomal protein subunit L16...    26   3.7  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    26   3.7  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   4.9  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    25   4.9  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   4.9  

>SPAC12G12.08 |mrpl6||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 213

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 157 MWQYTLALLSCSCAGATSIALSLLHLFSSGWTS*LQDG 44
           MW  T A+L+ +  G T    S++ L   G+ + L DG
Sbjct: 99  MWGTTRAILANNVKGVTMYWQSIIKLVGIGYRTSLNDG 136


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 278 DIKYYYKNVLIRIS-KKYIEIYATIIKNIIKMKTRFEVNFL 397
           D+K+++ +    ++ KKY+ +Y  +   I  +K   EVN L
Sbjct: 147 DVKWFHNHQYFAVAQKKYVYVYDNMGTEIHCLKRHIEVNAL 187


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -2

Query: 352 YNSGVNFNIFFRYPNQYIFIVIFDVHLGPSTLWRVGNPLCP 230
           YN  ++   F + PN++I +        PS   R+   LCP
Sbjct: 107 YNENLDQRSFSKTPNKHIEVKNLKDLCSPSHSGRISKSLCP 147


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 36  IPLPSCSQDVQPLENRCSNDKAIEVAPAQ 122
           +PLPS  ++ +PLE R  +D    +A  Q
Sbjct: 472 VPLPSEMKEAEPLEGRYPSDHVALMANVQ 500


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 107 FDSFVITTPIFKWLDILTTRWQRYNNTTHXIFSRR 3
           FDS  +T  +FK L++L   +++ ++    IF  R
Sbjct: 336 FDSTDVTDKVFKLLELLKATYRKSDSVRTVIFVER 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,543
Number of Sequences: 5004
Number of extensions: 40448
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)