Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I01
         (503 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40859| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_5139| Best HMM Match : WD40 (HMM E-Value=8.5e-27)                   27   8.8  

>SB_40859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 275 MDIKYYYKNVLIRISKKYIEIYATIIKNIIKMKTRFEV 388
           MDI Y YK  +++ +  +  +YA  IK ++  K + E+
Sbjct: 6   MDINYNYKVYIVKKNNLHGPLYAFEIKELVLAKYKAEI 43


>SB_5139| Best HMM Match : WD40 (HMM E-Value=8.5e-27)
          Length = 855

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 50  RWQRYNNTTHXIFSRR 3
           R+ RY NTTH  FSRR
Sbjct: 424 RYLRYKNTTHLHFSRR 439


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,351,071
Number of Sequences: 59808
Number of extensions: 277248
Number of successful extensions: 642
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)