Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I01
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   3.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.3  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   9.6  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   9.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 246 AIPFVLRNNSFFFAGSDCLLILA 178
           AIP+ +  ++ FF  +  LL++A
Sbjct: 139 AIPYAVTKSAMFFFAATSLLVVA 161


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 340 VNFNIFFRYPNQYIFIV 290
           ++ NI+ R  N+YI+IV
Sbjct: 360 ISSNIYERQNNEYIWIV 376


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 122 LCWSYFDSFVITTPI 78
           LCW+  +  + +TPI
Sbjct: 211 LCWTQDEDIICSTPI 225


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 322 KIY*NLRHYYKKYNKNENS 378
           KI  +  + YK YN N NS
Sbjct: 302 KIISSNNYNYKNYNNNYNS 320


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 322 KIY*NLRHYYKKYNKNENS 378
           KI  +  + YK YN N NS
Sbjct: 313 KIISSNNYNYKNYNNNYNS 331


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 122 LCWSYFDSFVITTPI 78
           LCW+  +  + +TPI
Sbjct: 158 LCWTQDEDVICSTPI 172


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -2

Query: 289 IFDVHLGPSTLWRVGNPLCPQEQQFFFCWF 200
           +  VHLG +  +R      PQ    F  W+
Sbjct: 339 LLSVHLGGNAEFRCEVSTHPQAGPHFITWY 368


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -2

Query: 289 IFDVHLGPSTLWRVGNPLCPQEQQFFFCWF 200
           +  VHLG +  +R      PQ    F  W+
Sbjct: 339 LLSVHLGGNAEFRCEVSTHPQAGPHFITWY 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,912
Number of Sequences: 438
Number of extensions: 3092
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)