Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_I01
         (503 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g28710.1 68414.m03536 expressed protein similar to GI:2827651...    31   0.44 
At1g09710.1 68414.m01090 myb family transcription factor contain...    27   5.4  
At3g58900.1 68416.m06564 F-box family protein contains F-box dom...    27   9.5  

>At1g28710.1 68414.m03536 expressed protein similar to GI:2827651,
           GI:7527728, GI:4406788, GI:6063544, GI:10764853 from
           [Arabidopsis thaliana]
          Length = 340

 Score = 31.1 bits (67), Expect = 0.44
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 161 GDVAIHTCLAFVFLCWSYFDSFVITTPIFKWLDILTTRWQRY 36
           G++A+   L F    + YF S  ++ P+   L  + TRW  Y
Sbjct: 8   GNLAVAVALLFAGALYFYFSSITVSDPMSDLLHNVETRWTEY 49


>At1g09710.1 68414.m01090 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 689

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 39  PLPSCSQDVQPLENRCSNDKAIEVAPAQEHESKASVYCHI 158
           PL     D  PL++    +  +E +PA  HE+      H+
Sbjct: 79  PLLPVEDDALPLDDDSDMECELEASPAVSHEASVEAIAHV 118


>At3g58900.1 68416.m06564 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 327

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 125 FLCWSYFDSFVITTPIFKWLDILTTRWQRYNNT 27
           +LC   F   ++  P  + LD+  TRW+  N T
Sbjct: 169 WLCIGQFQILLLACPALEELDMTNTRWKDSNVT 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,951,682
Number of Sequences: 28952
Number of extensions: 193478
Number of successful extensions: 446
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)