Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_H24
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...   312   2e-86
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...   312   2e-86
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...   312   2e-86
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    31   0.19 
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   9.4  

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score =  312 bits (767), Expect = 2e-86
 Identities = 141/201 (70%), Positives = 169/201 (84%)
 Frame = +1

Query: 46  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 225
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 226 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEXKM 405
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+E K 
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119

Query: 406 GDRGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDXPIL 585
           GDRG L R+SGN+  ++GH+ D  +T VKLPSGAKKV+PSS RG+VGIVAGGGRID P+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179

Query: 586 KAGRAYHKYKVKRNCWPYVRG 648
           KAGRA+HKY+VKRNCWP  RG
Sbjct: 180 KAGRAFHKYRVKRNCWPRTRG 200


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  312 bits (767), Expect = 2e-86
 Identities = 141/201 (70%), Positives = 169/201 (84%)
 Frame = +1

Query: 46  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 225
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 226 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEXKM 405
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+E K 
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119

Query: 406 GDRGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDXPIL 585
           GDRG L R+SGN+  ++GH+ D  +T VKLPSGAKKV+PSS RG+VGIVAGGGRID P+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179

Query: 586 KAGRAYHKYKVKRNCWPYVRG 648
           KAGRA+HKY+VKRNCWP  RG
Sbjct: 180 KAGRAFHKYRVKRNCWPRTRG 200


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  312 bits (767), Expect = 2e-86
 Identities = 141/201 (70%), Positives = 169/201 (84%)
 Frame = +1

Query: 46  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 225
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 226 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEXKM 405
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+E K 
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119

Query: 406 GDRGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDXPIL 585
           GDRG L R+SGN+  ++GH+ D  +T VKLPSGAKKV+PSS RG+VGIVAGGGRID P+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179

Query: 586 KAGRAYHKYKVKRNCWPYVRG 648
           KAGRA+HKY+VKRNCWP  RG
Sbjct: 180 KAGRAFHKYRVKRNCWPRTRG 200


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -3

Query: 557 PATIPTMPLLLDGRTFLAPDGSFTXVRLASGLCPITVAKFPEARARRPLSPIXSSRL 387
           PAT+P          F  P   F   +L SGL    V+ +P+   +   +P   SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 67  QRKGAGSVFVSHTKKRKGAPKLRSLD 144
           +R+G+     +HTK+ K APK    D
Sbjct: 167 KRRGSVGTTATHTKRSKNAPKTSPKD 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,579
Number of Sequences: 5004
Number of extensions: 56021
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)