Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_H24
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 347 4e-96
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 206 2e-53
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 56 2e-08
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 32 0.46
SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_35075| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023) 27 9.9
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 347 bits (854), Expect = 4e-96
Identities = 157/201 (78%), Positives = 175/201 (87%)
Frame = +1
Query: 46 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 225
MGRVIR QRKGAGS+F SHTK RKGA LR DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1 MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60
Query: 226 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEXKM 405
V FRDPY++K RKELF+A EG+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++E K
Sbjct: 61 VVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKT 120
Query: 406 GDRGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDXPIL 585
GDRGRLAR SGN+ATVI HN + KRT VKLPSG KKV+PSSNR +VGIVAGGGRID P+L
Sbjct: 121 GDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRALVGIVAGGGRIDKPML 180
Query: 586 KAGRAYHKYKVKRNCWPYVRG 648
KAGRAYHKYK KRNCWP VRG
Sbjct: 181 KAGRAYHKYKAKRNCWPRVRG 201
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 206 bits (502), Expect = 2e-53
Identities = 91/123 (73%), Positives = 107/123 (86%)
Frame = +1
Query: 172 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVM 351
GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A EG+YTGQF+YCGKKA L++GN +
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCL 60
Query: 352 PVGAMPEGTIVCNLEXKMGDRGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSN 531
PVG MPEGTI+ ++E K GDRGRLAR SGN+ATVI HN + KRT VKLPSG KKV+PSSN
Sbjct: 61 PVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSN 120
Query: 532 RGM 540
R +
Sbjct: 121 RAL 123
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 56.4 bits (130), Expect = 2e-08
Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 5/149 (3%)
Frame = +1
Query: 166 IKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYC--GKK---AT 330
IK V + +DP R A +A+V +++L IAP+ + G + GK A
Sbjct: 56 IKDKVLQVGYDPCRSARIALVAGNG----SNQEKLVIAPDEIQVGDVMTASRGKPESLAL 111
Query: 331 LEVGNVMPVGAMPEGTIVCNLEXKMGDRGRLARASGNFATVIGHNPDAKRTXVKLPSGAK 510
L+ G+ P+ +P GT+V N+E G +LARA+G A +I + V+LPS +
Sbjct: 112 LKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSKVE 169
Query: 511 KVLPSSNRGMVGIVAGGGRIDXPILKAGR 597
K + S VG V+ R + I KAGR
Sbjct: 170 KEVSSKCLASVGRVSNIERKNRVIGKAGR 198
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 560 PPATIPTMPLLLDGRTFLAPDGSFTXVR 477
P AT + L+LD TFL PDGS T ++
Sbjct: 135 PAATTTYLNLILDSETFLEPDGSATEMK 162
>SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 486
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Frame = -3
Query: 647 PRTYGQQLRLTLYLWYALPAFKIGXSIRPPPATIP-----TMPLLLDGRTFLAPDGSFTX 483
P + R +++L+Y+ P+ ++G R PP P T +L D S +
Sbjct: 39 PEARSSKQRYSIFLYYSGPSSRVGRFFRTPPGYGPVKCSSTQLVLPDHMFVYTTRSSRSH 98
Query: 482 VRLASGLCPITVAKF 438
VRL + IT F
Sbjct: 99 VRLHNSFFKITYHMF 113
>SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 250 TCMDRGSVQQPKVHLYQGHGLY 185
T D G +Q P HLY+ HG Y
Sbjct: 515 TVTDIGDLQYPVFHLYKEHGWY 536
>SB_35075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1184
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 513 GSAIKQQRHGRYCCWRWTY*XTYFESWKGIPQV 611
G+A+K + RY C W Y WK QV
Sbjct: 885 GTAVKGHGYTRYFCDFWKYTAQVLPLWKSTAQV 917
>SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 584
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 163 IHDVQRNLKSEV*ERLSSSSCEKRKLNRHPYAEHVLHD 50
I +V + + + R++SS C KRKL R E+ + D
Sbjct: 470 IQEVVKRERKKQRNRIASSKCRKRKLEREARLENRVKD 507
>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
Length = 565
Score = 27.5 bits (58), Expect = 9.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 216 FGCCTLPRSIQVQDK 260
FGCC +P ++ QDK
Sbjct: 182 FGCCVMPNAVHCQDK 196
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,325,004
Number of Sequences: 59808
Number of extensions: 456198
Number of successful extensions: 1040
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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