Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_H24
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 311 3e-85
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 310 5e-85
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 308 2e-84
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 53 1e-07
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 53 1e-07
At3g27500.1 68416.m03438 DC1 domain-containing protein contains ... 32 0.29
At3g45860.1 68416.m04963 receptor-like protein kinase, putative ... 29 3.5
At2g22730.1 68415.m02694 transporter-related low similarity to s... 28 4.7
At5g65290.1 68418.m08212 LMBR1 integral membrane family protein ... 28 6.1
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 28 6.1
At1g53170.1 68414.m06025 ethylene-responsive element-binding fac... 27 8.1
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 311 bits (763), Expect = 3e-85
Identities = 140/201 (69%), Positives = 168/201 (83%)
Frame = +1
Query: 46 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 225
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 226 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEXKM 405
V FR P++FK +KELF+A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E +
Sbjct: 61 VTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHV 120
Query: 406 GDRGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDXPIL 585
GDRG LARASG++A VI HNPD+ T +KLPSG+KK++PS R M+G VAGGGR + P+L
Sbjct: 121 GDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPML 180
Query: 586 KAGRAYHKYKVKRNCWPYVRG 648
KAG AYHKY+VKRN WP VRG
Sbjct: 181 KAGNAYHKYRVKRNSWPKVRG 201
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 310 bits (761), Expect = 5e-85
Identities = 138/201 (68%), Positives = 167/201 (83%)
Frame = +1
Query: 46 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 225
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 226 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEXKM 405
V FR P++FK +KELF+A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E +
Sbjct: 61 VAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHV 120
Query: 406 GDRGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDXPIL 585
GDRG ARASG++A VI HNPD + +KLPSG+KK++PS R M+G VAGGGR + P+L
Sbjct: 121 GDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPML 180
Query: 586 KAGRAYHKYKVKRNCWPYVRG 648
KAG AYHKY+VKRNCWP VRG
Sbjct: 181 KAGNAYHKYRVKRNCWPKVRG 201
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 308 bits (756), Expect = 2e-84
Identities = 138/202 (68%), Positives = 167/202 (82%), Gaps = 1/202 (0%)
Frame = +1
Query: 46 MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 222
MGRVIRAQRKGA GSVF SHT RKG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60
Query: 223 VVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEXK 402
V FR P+++ +KELF+A EG+YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E
Sbjct: 61 RVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELH 120
Query: 403 MGDRGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAGGGRIDXPI 582
+GDRG LARASG++A VI HNP++ T VKLPSG+KK+LPS+ R M+G VAGGGR + P
Sbjct: 121 VGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPF 180
Query: 583 LKAGRAYHKYKVKRNCWPYVRG 648
LKAG AYHKYK KRNCWP VRG
Sbjct: 181 LKAGNAYHKYKAKRNCWPVVRG 202
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 53.2 bits (122), Expect = 1e-07
Identities = 28/88 (31%), Positives = 47/88 (53%)
Frame = +1
Query: 337 VGNVMPVGAMPEGTIVCNLEXKMGDRGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKV 516
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 517 LPSSNRGMVGIVAGGGRIDXPILKAGRA 600
+ + R +G V+ + KAG++
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKAGQS 145
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 53.2 bits (122), Expect = 1e-07
Identities = 28/88 (31%), Positives = 47/88 (53%)
Frame = +1
Query: 337 VGNVMPVGAMPEGTIVCNLEXKMGDRGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKV 516
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 517 LPSSNRGMVGIVAGGGRIDXPILKAGRA 600
+ + R +G V+ + KAG++
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKAGQS 145
>At3g27500.1 68416.m03438 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 609
Score = 32.3 bits (70), Expect = 0.29
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 396 FKIAHNGTLRHSSNRH-HISNFKSCFLSTINKLACVEPFGSNEELLPCLELVWI 238
FK + T+ H S+RH H+S K S+ K AC P GS+ L C E +I
Sbjct: 363 FKRNDDNTIDHFSHRHNHMSLDKGGEESSFCK-ACAHPIGSSSSLYKCSECSFI 415
>At3g45860.1 68416.m04963 receptor-like protein kinase, putative
similar to receptor-like protein kinase 4 (gi:13506745),
5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
thaliana; contains Pfam protein kinase domain PF00069
Length = 676
Score = 28.7 bits (61), Expect = 3.5
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = -2
Query: 492 LYXCTLSIRIVSNHSGEVSRGTCQT--TSITHFXFKIAHNGTLRHSSNRHHISNFKSCFL 319
LY C + +V + + R + + +++T+ I NG SSN++ + F+
Sbjct: 110 LYWCPYNKEVVLYYDECMLRYSHRNILSTVTYDGSAILLNGANISSSNQNQVDEFRDLVS 169
Query: 318 STINKLACVEPFGSNEE 268
ST+N LA VE S+++
Sbjct: 170 STLN-LAAVEAANSSKK 185
>At2g22730.1 68415.m02694 transporter-related low similarity to
spinster membrane proteins from [Drosophila
melanogaster] GI:12003974, GI:12003976, GI:12003972,
GI:12003970; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 510
Score = 28.3 bits (60), Expect = 4.7
Identities = 24/79 (30%), Positives = 31/79 (39%)
Frame = -3
Query: 554 ATIPTMPLLLDGRTFLAPDGSFTXVRLASGLCPITVAKFPEARARRPLSPIXSSRLHTMV 375
ATIP LL G TFL FT L S I + E +P+ LH +
Sbjct: 361 ATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIALFALGELLVFATQAPVNYVCLHCVK 420
Query: 374 PSGIAPTGITFPTSRVAFF 318
PS + P + T + F
Sbjct: 421 PS-LRPLSMAISTVAIHIF 438
>At5g65290.1 68418.m08212 LMBR1 integral membrane family protein
contains Pfam PF04791: LMBR1-like conserved region
Length = 733
Score = 27.9 bits (59), Expect = 6.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 555 WRWTY*XTYFESWKGIPQVQG 617
W W+Y T+ +W +P +QG
Sbjct: 74 WSWSYWSTFLLTWAVVPLIQG 94
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 447 GEVSRGTCQTTSITHFXFKIAHNGTLRHSSNRHHISNF 334
G+V GTC +A +G +R N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154
>At1g53170.1 68414.m06025 ethylene-responsive element-binding factor
8 / ERF transcription factor 8 (ERF8) identical to ERF
transcription factor 8 GI:10567108 from [Arabidopsis
thaliana]
Length = 185
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 418 RLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLP 522
R +A NF ++G +P T V P+ A+ + P
Sbjct: 78 RGVKAKTNFGVIVGSSPTQSSTVVDSPTAARFITP 112
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,695,261
Number of Sequences: 28952
Number of extensions: 309193
Number of successful extensions: 793
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -