Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_H23
(423 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g32430.1 68417.m04616 pentatricopeptide (PPR) repeat-containi... 30 0.74
At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containi... 29 1.3
At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containi... 28 3.0
At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) / po... 28 3.0
At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containi... 27 4.0
At3g26580.1 68416.m03318 expressed protein 27 5.2
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n... 27 5.2
At2g14570.1 68415.m01632 SWIM zinc finger family protein 27 5.2
At5g19610.1 68418.m02334 sec7 domain-containing protein similar ... 27 6.9
At4g20290.1 68417.m02963 expressed protein 27 6.9
At2g37380.1 68415.m04584 expressed protein 27 6.9
At4g35880.1 68417.m05095 aspartyl protease family protein contai... 26 9.1
At4g31070.1 68417.m04411 pentatricopeptide (PPR) repeat-containi... 26 9.1
>At4g32430.1 68417.m04616 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 763
Score = 29.9 bits (64), Expect = 0.74
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +1
Query: 112 GLLNAV-IKRNIIVALALSGVA---GFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM 270
GL+NAV I L + G+ GF + +GN YA+F DA+K FE++
Sbjct: 377 GLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDI 433
>At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 501
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 175 GFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGL 285
GF F +GN Y +T DA K F+EM ++ +
Sbjct: 143 GFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNV 179
>At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 850
Score = 27.9 bits (59), Expect = 3.0
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 151 ALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM 270
A ALS V GF +GN Y+ DA K F+EM
Sbjct: 149 AHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEM 188
>At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) /
potassium channel protein identical to SKOR [Arabidopsis
thaliana] gi|3810676|emb|CAA11280; member of the 1 pore,
6 transmembrane (1P/6TM) Shaker K+ channel family,
PMID:11500563
Length = 828
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 204 ITNELLEGKTSDARESQSNNNVTFDDGVEE 115
I N LLEGK S+ R Q +++TF +E
Sbjct: 516 ILNNLLEGKESNVRIKQLESDITFHISKQE 545
>At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 792
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 169 VAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKK 279
V G + L+G+ + Y +F+R DA K F+ M +K
Sbjct: 147 VDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEK 183
>At3g26580.1 68416.m03318 expressed protein
Length = 350
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 196 IGNERKRKYAEFYRTYDAEKEFEEMRKK 279
+ ERKR+ EF+ T + E++ EE++ K
Sbjct: 113 VEKERKRRAKEFHDTKELERKAEELQYK 140
>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1)
nearly identical to retinoblastoma-related protein
[Arabidopsis thaliana] GI:8777927; contains Pfam
profiles: PF01858 retinoblastoma-associated protein A
domain, PF01857 retinoblastoma-associated protein B
domain
Length = 1013
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 172 AGFTFKQLIGNERKRKYAEFYRTYDAEKE 258
A F L+ KR + EF+ TYDA E
Sbjct: 149 ANFVHLSLLSKYYKRGFREFFLTYDANAE 177
>At2g14570.1 68415.m01632 SWIM zinc finger family protein
Length = 435
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 215 ESMLNSTEPMMLKRNLRRCARRVYSNPAKYELSXC 319
+ +LN+ E + K R CAR +Y N K LS C
Sbjct: 275 KGLLNAIERKLPKVEYRMCARHIYGNLKK--LSPC 307
>At5g19610.1 68418.m02334 sec7 domain-containing protein similar to
SP|Q42510 Pattern formation protein EMB30 (GNOM)
{Arabidopsis thaliana}; contains Pfam profile PF01369:
Sec7 domain
Length = 1375
Score = 26.6 bits (56), Expect = 6.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 6 DCDPLCN*AFLTFSKIIIRH 65
DCDP+C F K++ RH
Sbjct: 391 DCDPMCRNIFEETGKVLCRH 410
>At4g20290.1 68417.m02963 expressed protein
Length = 118
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 187 KQLIGNERKRKYAEFYRTYDAEKEFEEMRKKG 282
K+ G E+KR+ + D E+E EE R+KG
Sbjct: 13 KERGGEEKKRRRSALNSEEDEEEEEEEGRRKG 44
>At2g37380.1 68415.m04584 expressed protein
Length = 321
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 39 TFSKIIIRHGWRKCSIDSEQASDARS 116
+FS +I RH KCS S +S A S
Sbjct: 228 SFSGVIQRHSQAKCSTSSSSSSSASS 253
>At4g35880.1 68417.m05095 aspartyl protease family protein contains
Eukaryotic and viral aspartyl proteases active site,
PROSITE:PS00141
Length = 524
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = -1
Query: 228 FSILSLALITNELLEGKTSDARESQSNNNVTFDDGVEETSHLRLARCRYCT 76
F + ++ + L+ G+ ES+S +++TF DG + L Y T
Sbjct: 60 FEYFNALVLRDWLIRGRRLSESESESESSLTFSDGNSTSRISSLGFLHYTT 110
>At4g31070.1 68417.m04411 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 613
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 172 AGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGLFQSC 297
AG ++ N YA+F R Y K F+EM + C
Sbjct: 76 AGADCDTVVSNSLISMYAKFSRKYAVRKVFDEMLHRDTVSYC 117
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,863,626
Number of Sequences: 28952
Number of extensions: 114587
Number of successful extensions: 385
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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