Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_H22
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 301 2e-82
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 301 3e-82
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 299 8e-82
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 29 3.6
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 4.7
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 28 6.2
At5g13030.1 68418.m01494 expressed protein contains Pfam profile... 27 8.2
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ... 27 8.2
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 27 8.2
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 301 bits (740), Expect = 2e-82
Identities = 139/204 (68%), Positives = 158/204 (77%)
Frame = +2
Query: 41 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 220
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 221 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLXTGMRGAFG 400
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRL TGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 401 KPQGTVXRVRIGQPIMSVRSXDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDX 580
K GT RV IGQ ++SVR D EALRRAKFKFPGRQKI VS+KWGFTK+ R
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAE 180
Query: 581 FDKLREXGRLANDGCIVQYRPEHG 652
+ KLR R+ DG ++ HG
Sbjct: 181 YTKLRAMKRIVPDGVNAKFLSNHG 204
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 301 bits (738), Expect = 3e-82
Identities = 140/204 (68%), Positives = 159/204 (77%)
Frame = +2
Query: 41 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 220
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 221 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLXTGMRGAFG 400
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRL TGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 401 KPQGTVXRVRIGQPIMSVRSXDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDX 580
K GT RV IGQ ++SVR D EALRRAKFKFPGRQKI VS+KWGFTK+ R
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAD 180
Query: 581 FDKLREXGRLANDGCIVQYRPEHG 652
F KLR+ R+ DG ++ HG
Sbjct: 181 FTKLRQEKRVVPDGVNAKFLSCHG 204
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 299 bits (735), Expect = 8e-82
Identities = 139/204 (68%), Positives = 159/204 (77%)
Frame = +2
Query: 41 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 220
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 221 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLXTGMRGAFG 400
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRL TGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 401 KPQGTVXRVRIGQPIMSVRSXDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDX 580
K GT RV IGQ ++SVR D EALRRAKFKFPGRQKI VS+KWGFTK+ R
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAD 180
Query: 581 FDKLREXGRLANDGCIVQYRPEHG 652
+ KLR+ R+ DG ++ HG
Sbjct: 181 YTKLRQEKRIVPDGVNAKFLSCHG 204
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 224 SEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSC 355
S+A+ G C C+ + K CG+ I+ HP H +++ C
Sbjct: 65 SKAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 200 SDEYEQLSSEALEAGRICCNKYLV 271
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 248 ICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 337
+ C K K C + F I HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136
>At5g13030.1 68418.m01494 expressed protein contains Pfam profile
PF02696: Uncharacterized ACR, YdiU/UPF0061 family
Length = 633
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 491 ALRRAKFKFPGRQKIYVSKKWGFTKYERDXFDKL 592
A+ R KF + +SKK G TKY ++ KL
Sbjct: 455 AMERYGDKFMDEYQAIMSKKLGLTKYNKEVISKL 488
>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 342
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 152 KKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG--KDQFHIRMRLHPFH 325
KK + PL + +++ EYE GR CCN ++CG + ++ + P+H
Sbjct: 255 KKHHALRPHPLTLTVITSEYEG------NVGRFCCNACQRESCGFVYEDLGAKIGVLPYH 308
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 149 PNRRYG-SWDQVHPDRTSISDTVYFCSTGSISLAGAP 42
PN R+G S+D +PD + D VY G +L P
Sbjct: 53 PNHRFGVSYDDGYPDERLMRDDVYNYPPGHNTLGDLP 89
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,359,859
Number of Sequences: 28952
Number of extensions: 336574
Number of successful extensions: 930
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -