Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_H19
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    27   1.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   1.8  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.5  

>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -2

Query: 309 ELFQVDAIEASGAIEAMGTSSNVIGQSNQQPGIVDIG-EHGQVTKDEATNPQWKAVTAFF 133
           EL +  A  A   + + G  S+ +   ++ PG+VD+G E+ +V  DEAT  +  A  AF 
Sbjct: 377 ELLERSADTADADVPS-GLYSHALVNLHEHPGLVDLGSENIRVPIDEATALKSFAKAAFL 435

Query: 132 AQT 124
             +
Sbjct: 436 GHS 438


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 26/85 (30%), Positives = 35/85 (41%)
 Frame = +1

Query: 103 NTLSSTSSLGKKCCYCFPLRIGCFILGYLTMFTNVYNTGLLITLTNYIGAGSHSFDRTTS 282
           +TL++T      C    P   G  + G   ++ +VY TG  +  T      S S   TTS
Sbjct: 83  STLTATEVSSSLCTTPCP-GYGSLMCGG-DLYWSVYLTGNGVLQTT---VSSSSVSSTTS 137

Query: 283 FDSIDLEELSEPTTTLQPAQQSSES 357
             S      S  TTT  P+  SS S
Sbjct: 138 SSSSSSPSSSSTTTTTSPSSSSSSS 162


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 94  LPYNTLSSTSSLGKKCCYCFPLRIGCFILGYLTMFTNVYNTGLLITLTNYIGAGSHSFD 270
           + +  + S  ++ KK C    LR    ILG+L ++   + +   I L   I  G H F+
Sbjct: 185 ISFINIRSWRTIPKKWCVLQVLRYFHRILGHLWLYVGFFESCTGIVLLAGIFKGQHIFN 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,635
Number of Sequences: 5004
Number of extensions: 45893
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)