Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_H17
         (652 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   1.6  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   2.9  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   2.9  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    21   6.7  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
 Frame = -3

Query: 536 IPQXWGSPVIVNVFP-LPVTP*V-NNKPFLPLIKP----STNGSETLSKTSCCDASGGKI 375
           +P+   +P I++  P LP T  + NN P LP + P           ++ ++ C+++   I
Sbjct: 148 MPKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINPSAICESAAQLI 207

Query: 374 SLNVYFMVLLPSF 336
            +NV ++  +P+F
Sbjct: 208 FMNVQWVRSIPAF 220


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +1

Query: 448 KGKNGLLFTYGVTGSGKTFTMTGEPXNCGILPRCLNIIFKTIND 579
           + +NG   T   +    TF    +  N    PR  +I+ K  ND
Sbjct: 376 RARNGTFSTTANSCRSSTFRNNRDEYNVCFRPRNNSILIKNFND 419


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = -3

Query: 503 NVFPLPVTP*VNNKPFLPLIKPSTNGSETLSKTSCCDASGGKISLNVYFMVLLPSF 336
           N  PLP  P +   P  P+  P+      ++ ++ C+++   + +NV ++  +P+F
Sbjct: 173 NYLPLPQVPPL---PLPPIFAPTM-----INPSAICESAAQLLFMNVQWVRSIPAF 220


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 203 LRTAILYKSTVDFAPCKEKVMCRV*RLYH 289
           L++ I    + D A C EKV   V ++ H
Sbjct: 58  LKSTIPEALSTDCAKCNEKVKANVRKVLH 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,272
Number of Sequences: 336
Number of extensions: 2880
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)