Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_H17
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               25   0.48 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.8  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 147 FNGLHFCYILSSHIIFKYFG*ISLQRLSNKSKQRS 43
           F   HF +IL   +IF YFG   +++   K  + S
Sbjct: 2   FKNYHFFFILVITLIFLYFGEADIKKDCRKESKVS 36


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 173 RISFNLCFDLTDFIFVIFYRHI 108
           RI F +CF   + ++ I Y HI
Sbjct: 409 RIVFPVCFVCFNLMYWIIYLHI 430


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 173 RISFNLCFDLTDFIFVIFYRHI 108
           RI F +CF   + ++ I Y HI
Sbjct: 409 RIVFPVCFVCFNLMYWIIYLHI 430


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 578 ISKLTNMCSNRTK*TCSIFK 637
           I K  + C NR   TC++F+
Sbjct: 704 IGKALSKCHNRNVTTCNMFR 723


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/53 (24%), Positives = 22/53 (41%)
 Frame = +1

Query: 127  TKMKSVKSKQRLNEMRTPARSKQNLAQDRDPVQVYCRLRPMQRESDVSCMKII 285
            T MKSV S++R    +      ++   + DP Q+         + D   +K I
Sbjct: 1759 TSMKSVSSRRRQQRKQQTPGDVESDESESDPDQLTSSRTESSNQLDAGKLKHI 1811


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/53 (24%), Positives = 22/53 (41%)
 Frame = +1

Query: 127  TKMKSVKSKQRLNEMRTPARSKQNLAQDRDPVQVYCRLRPMQRESDVSCMKII 285
            T MKSV S++R    +      ++   + DP Q+         + D   +K I
Sbjct: 1755 TSMKSVSSRRRQQRKQQTPGDVESDESESDPDQLTSSRTESSNQLDAGKLKHI 1807


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,384
Number of Sequences: 438
Number of extensions: 3539
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)