Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_H16
         (656 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   5.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.7  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   8.9  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 531 CMNGCLPSLGHQAQC 575
           C+N  LP +GH+ QC
Sbjct: 44  CVN--LPGVGHRCQC 56


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 568 AWWPKDGRHPFIQIISFWSCT 506
           A++P    HPF+    F SCT
Sbjct: 755 AYFPGSRFHPFLIPTGFDSCT 775


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 28  CVNFCNFSLTT*LIVISXINVKLIC 102
           C NFC   +T  LI +  +  +L C
Sbjct: 526 CKNFCFGFITKQLIFMIFVTYQLYC 550


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,756
Number of Sequences: 336
Number of extensions: 3574
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)