Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_H16
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 105 2e-23
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 105 2e-23
AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical... 74 8e-14
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 60 1e-09
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 60 1e-09
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 58 4e-09
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 56 2e-08
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 56 2e-08
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 54 9e-08
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 54 1e-07
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 53 2e-07
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 52 3e-07
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 50 1e-06
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 47 1e-05
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 47 1e-05
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 44 7e-05
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 43 2e-04
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 42 5e-04
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 38 0.006
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 37 0.011
Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical pr... 37 0.014
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 37 0.014
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 37 0.014
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 34 0.077
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 33 0.18
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 30 1.3
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 30 1.3
Z78412-3|CAB01651.2| 236|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF000263-19|AAG00021.1| 321|Caenorhabditis elegans Collagen pro... 27 3.6
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 29 3.8
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p... 28 5.1
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p... 28 5.1
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact... 28 5.1
U64843-12|AAL08039.1| 492|Caenorhabditis elegans Hypothetical p... 27 8.9
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 105 bits (253), Expect = 2e-23
Identities = 45/68 (66%), Positives = 52/68 (76%)
Frame = +2
Query: 452 KRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPXYPFK 631
KRIQKEL ++ DPP CSAGP GD+L+ W +TI+GPP S Y+GGVFFL IHF YPFK
Sbjct: 4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63
Query: 632 PPKVTFRT 655
PPKV F T
Sbjct: 64 PPKVAFTT 71
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 105 bits (253), Expect = 2e-23
Identities = 45/68 (66%), Positives = 52/68 (76%)
Frame = +2
Query: 452 KRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPXYPFK 631
KRIQKEL ++ DPP CSAGP GD+L+ W +TI+GPP S Y+GGVFFL IHF YPFK
Sbjct: 4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63
Query: 632 PPKVTFRT 655
PPKV F T
Sbjct: 64 PPKVAFTT 71
>AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical
protein F52C6.12 protein.
Length = 78
Score = 74.1 bits (174), Expect = 8e-14
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = +2
Query: 452 KRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDI 604
KRIQKEL ++ DPP CS G GD+LY W +TI+GPP S Y+GG+FFL I
Sbjct: 4 KRIQKELHDLGRDPPAQCSTGSVGDDLYHWQATIMGPPESPYQGGIFFLTI 54
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 60.1 bits (139), Expect = 1e-09
Identities = 25/68 (36%), Positives = 37/68 (54%)
Frame = +2
Query: 446 SAKRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPXYP 625
S +R+ ++ ++ DPP S P DN+ W + I GP + +E G F L + F+ YP
Sbjct: 5 SRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYP 64
Query: 626 FKPPKVTF 649
KPP V F
Sbjct: 65 NKPPTVKF 72
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 60.1 bits (139), Expect = 1e-09
Identities = 25/68 (36%), Positives = 37/68 (54%)
Frame = +2
Query: 446 SAKRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPXYP 625
S +R+ ++ ++ DPP S P DN+ W + I GP + +E G F L + F+ YP
Sbjct: 5 SRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYP 64
Query: 626 FKPPKVTF 649
KPP V F
Sbjct: 65 NKPPTVKF 72
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +2
Query: 446 SAKRIQKELAEITLDPPPNCSAGPKGDN-LYEWVSTILGPPGSVYEGGVFFLDIHFSPXY 622
S+ ++K+LA++ P SAG DN +Y+W ++GPP ++YEGG F + F Y
Sbjct: 4 SSLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDY 63
Query: 623 PFKPPKVTF 649
P KPPK+ F
Sbjct: 64 PQKPPKMKF 72
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +2
Query: 425 MSKALGTSA-KRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLD 601
M+ + T A +R++K+ + +P P A P N+ EW I+G P + YEGG++
Sbjct: 1 MTSGVSTVALQRLKKDYQRLLKEPVPFMKAAPLETNILEWRYIIIGAPKTPYEGGIYMGK 60
Query: 602 IHFSPXYPFKPPKVTFRT 655
+ F +PFKPP + T
Sbjct: 61 LLFPKDFPFKPPAILMLT 78
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 440 GTSAKRIQKELAEITLDPPPNCSAGP-KGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSP 616
G + KR+ E E+T PP A P DN +EW I GP + + GVF I F
Sbjct: 3 GYALKRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITFPQ 62
Query: 617 XYPFKPPKVTF 649
YP PPK+ F
Sbjct: 63 DYPLSPPKMRF 73
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 54.0 bits (124), Expect = 9e-08
Identities = 23/74 (31%), Positives = 40/74 (54%)
Frame = +2
Query: 434 ALGTSAKRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFS 613
A ++ +R+QK+ A++ DP A P DN+ EW + G P + + GG ++ + F
Sbjct: 16 ASSSAVRRLQKDYAKLMQDPVDGIKALPNEDNILEWHYCLRGSPDTPFYGGYYWGKVIFK 75
Query: 614 PXYPFKPPKVTFRT 655
+P+ PP +T T
Sbjct: 76 ENFPWSPPAITMIT 89
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +2
Query: 428 SKALGTSA--KRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLD 601
SKA +S + + EL + P + DNL+ W I GPP ++Y+GG F
Sbjct: 3 SKASTSSGALRALTMELKNLQSQPVEGFTIDVNEDNLFVWTVGIYGPPKTLYQGGYFKAS 62
Query: 602 IHFSPXYPFKPPKVTFRT 655
I F YP+ PP + F T
Sbjct: 63 IRFPSNYPYSPPSMKFTT 80
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/72 (38%), Positives = 34/72 (47%)
Frame = +2
Query: 440 GTSAKRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPX 619
G +RI KE + DP P SA P N + I GP S + GGVF L++
Sbjct: 3 GQLPRRIIKETQRLLADPVPGISANPDESNARYFHVMIAGPDDSPFAGGVFKLELFLPEE 62
Query: 620 YPFKPPKVTFRT 655
YP PKV F T
Sbjct: 63 YPMAAPKVRFMT 74
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/68 (39%), Positives = 36/68 (52%)
Frame = +2
Query: 452 KRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPXYPFK 631
+R+ KE E+ P A P DNL+EW TI G G+ +EGG++ I F YP K
Sbjct: 13 RRLMKEAMELR-QPTEMYHAQPMEDNLFEWHFTIRGTLGTDFEGGIYHGRIIFPADYPMK 71
Query: 632 PPKVTFRT 655
PP + T
Sbjct: 72 PPNLILLT 79
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 446 SAKRIQKELAEITLDPPPNCSAG--PKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPX 619
+ +R+ KELA++ + P ++L +W ++G G++Y G VF L F P
Sbjct: 5 ATRRLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFTFGPQ 64
Query: 620 YPFKPPKVTF 649
YPF P+V F
Sbjct: 65 YPFNSPEVMF 74
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/44 (50%), Positives = 25/44 (56%)
Frame = +2
Query: 524 DNLYEWVSTILGPPGSVYEGGVFFLDIHFSPXYPFKPPKVTFRT 655
+NL E I GPP + Y GG+F LDI YPF PP V F T
Sbjct: 34 ENLTEIKGHIRGPPDTPYAGGMFDLDIKIPDQYPFSPPNVKFST 77
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 46.8 bits (106), Expect = 1e-05
Identities = 32/89 (35%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +2
Query: 401 KENKPNHKMSKALGTSAKRIQKELAEITLDPPPNCSAGPK---GDNLYEWVSTIL-GPPG 568
KE K + S L KRI KELA I P N S + + + ++ GP
Sbjct: 395 KEAKNINPFSPHLRDRTKRIAKELASIANALPLNASNSIYVCYDEGRVDIIKVLISGPDD 454
Query: 569 SVYEGGVFFLDIHFSPXYPFKPPKVTFRT 655
+ Y G+F DI F YPF PPK F T
Sbjct: 455 TPYANGLFEFDIFFPTGYPFSPPKCAFLT 483
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 44.4 bits (100), Expect = 7e-05
Identities = 26/75 (34%), Positives = 34/75 (45%)
Frame = +2
Query: 422 KMSKALGTSAKRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLD 601
KMS R KE+A + K +NL + I GP G+ Y GG F +
Sbjct: 14 KMSNLALARVTRKCKEVANASDITEAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEIK 73
Query: 602 IHFSPXYPFKPPKVT 646
+ YPF+PPKVT
Sbjct: 74 VDIPEHYPFEPPKVT 88
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 443 TSAKRIQKELAEI-TLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPX 619
++ +R+QKEL ++ + + NL +W + +L P Y G F + I F
Sbjct: 2 SATRRLQKELGDLKNCGVKAYENVECEETNLLKW-TVLLIPDKEPYNKGAFKVGITFPVD 60
Query: 620 YPFKPPKVTFRT 655
YPFKPPKV F T
Sbjct: 61 YPFKPPKVAFET 72
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +2
Query: 500 NCSAGPKGDN---LYEWVSTILGPPGSVYEGGVFFLDIHFSPXYPFKPPKVTFRT 655
N S G + D+ L W ++I+GPP + YE ++ L I YP +PP V F T
Sbjct: 25 NISWGLEDDSDMTLTRWTASIIGPPRTPYESRIYNLQIQCGGNYPREPPTVRFTT 79
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +2
Query: 551 ILGPPGSVYEGGVFFLDIHFSPXYPFKPPKVTFRT 655
I G + YEGG+F LDI YPFK P V F T
Sbjct: 385 IKGVEETPYEGGIFELDIKIGESYPFKAPTVKFIT 419
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Frame = +2
Query: 428 SKALGTSAKRIQKELAEITLDPPPNCSAGP---KGDNLY-EWVSTILGPPGSVYEGGVFF 595
S+ +++E A+ P +A P +G +++ W+ T+ GP GS +EGG +
Sbjct: 30 SREFTNEINTVKEEKAKWDERTPQGYTAKPISFEGADIWCSWICTVPGPRGSPWEGGEYE 89
Query: 596 LDIHFSPXYPFKPPKVTFRT 655
+ ++F +P PP F+T
Sbjct: 90 VSVNFH-KWPIIPPICEFKT 108
>Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical
protein F26H9.7 protein.
Length = 219
Score = 36.7 bits (81), Expect = 0.014
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 557 GPPGSVYEGGVFFLDIHFSPXYPFK-PPKVTFRT 655
GP GS+YEGG FF DI+ P P+V F T
Sbjct: 70 GPVGSIYEGGTFFADINIQPYQNHSLIPRVCFHT 103
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +2
Query: 440 GTSAKRIQKELAEITLDPPPNCSAGPKGD-----NLYEWVSTILGPPGSVYEGGVFFLDI 604
G +A R+ +E D P A P + NL+ W I G +++EGG++ + +
Sbjct: 3 GIAAGRLAEERKHWRKDHPFGFIAKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRIRM 62
Query: 605 HFSPXYPFKPPKVTF 649
F +P PPK F
Sbjct: 63 LFKDDFPSTPPKCKF 77
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +2
Query: 440 GTSAKRIQKELAEITLDPPPNCSAGPKGD-----NLYEWVSTILGPPGSVYEGGVFFLDI 604
G +A R+ +E D P A P + NL+ W I G +++EGG++ + +
Sbjct: 3 GIAAGRLAEERKHWRKDHPFGFIAKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRIRM 62
Query: 605 HFSPXYPFKPPKVTF 649
F +P PPK F
Sbjct: 63 LFKDDFPSTPPKCKF 77
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 34.3 bits (75), Expect = 0.077
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 551 ILGPPGSVYEGGVFFLDIHFSPXYPFKPPKVTFRT 655
I GP + YE GVF +D+ F YP P++ F+T
Sbjct: 35 IAGPADTPYETGVFEVDLTFPDNYPNALPQIKFQT 69
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 536 EWVSTILGPPGSVYEGGVFFLDIHFSPXYPFKPPKVTF 649
E++ GP + YE GV+ + + YPFK P + F
Sbjct: 34 EFIVRFHGPKDTAYENGVWRIRVDMPDKYPFKSPSIGF 71
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 585 PPSYTEPGGPRMVDTHSYKLSPFGPALQFGGGSNVI 478
PP+YT P + D SY+ GP GG +N++
Sbjct: 186 PPTYTFGADPSVADFSSYQQQLAGPPNGLGGDTNLV 221
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 585 PPSYTEPGGPRMVDTHSYKLSPFGPALQFGGGSNVI 478
PP+YT P + D SY+ GP GG +N++
Sbjct: 186 PPTYTFGADPSVADFSSYQQQLAGPPNGLGGDTNLV 221
>Z78412-3|CAB01651.2| 236|Caenorhabditis elegans Hypothetical
protein M176.4 protein.
Length = 236
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -1
Query: 545 TPIHTNYLLLVLHCSLVVGPM*FLPIPFESSWPM 444
T IHT +LL +L +LV+G + F+P+ + P+
Sbjct: 108 TKIHTKFLLGMLAWALVIGQLCFIPMLADHRGPL 141
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +2
Query: 455 RIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPXYPFKP 634
RI+KE+A++ + K + + + G +Y+ +F L + + YPFKP
Sbjct: 17 RIRKEIADLAKNKRRFIKDFRKIEKCKDIFQFKIIGDGVLYKNMIFTLTLDVNVEYPFKP 76
Query: 635 PKVTF 649
P + F
Sbjct: 77 PYLKF 81
>AF000263-19|AAG00021.1| 321|Caenorhabditis elegans Collagen
protein 56 protein.
Length = 321
Score = 26.6 bits (56), Expect(2) = 3.6
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 503 CSAGPKGDNLYEWVSTILGPPGSV 574
C AGP GD E I GPPG +
Sbjct: 139 CPAGPPGDPGMEGSDGIPGPPGLI 162
Score = 20.6 bits (41), Expect(2) = 3.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +2
Query: 494 PPNCSAGPKG 523
PP C +GP G
Sbjct: 96 PPECPSGPPG 105
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 585 PPSYTEPGGPRMVDTHSYKLSPFGPALQFGGGSNVISAN 469
PP+YT P + D SY+ G GG +N++ N
Sbjct: 186 PPTYTFGADPSVADFSSYQQQLAGQPNGLGGDTNLVDYN 224
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 585 PPSYTEPGGPRMVDTHSYKLSPFGPALQFGGGSNVISAN 469
PP+YT P + D SY+ G GG +N++ N
Sbjct: 186 PPTYTFGADPSVADFSSYQQQLAGQPNGLGGDTNLVDYN 224
>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
protein 10, isoform b protein.
Length = 1371
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 381 QTANQTRKRTNQTIKCQRLSAHRPRGFKRNWQKLHWTHHQTAVQDQ 518
QT Q ++RTN + ++ +P ++ N H H+Q Q+Q
Sbjct: 283 QTGPQNQQRTNDSRTMKQTPQQQPSQYQNNVGAAHQHHNQHGQQEQ 328
>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
protein 10, isoform a protein.
Length = 1563
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 381 QTANQTRKRTNQTIKCQRLSAHRPRGFKRNWQKLHWTHHQTAVQDQ 518
QT Q ++RTN + ++ +P ++ N H H+Q Q+Q
Sbjct: 283 QTGPQNQQRTNDSRTMKQTPQQQPSQYQNNVGAAHQHHNQHGQQEQ 328
>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
molecule UNC-10 protein.
Length = 1563
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 381 QTANQTRKRTNQTIKCQRLSAHRPRGFKRNWQKLHWTHHQTAVQDQ 518
QT Q ++RTN + ++ +P ++ N H H+Q Q+Q
Sbjct: 283 QTGPQNQQRTNDSRTMKQTPQQQPSQYQNNVGAAHQHHNQHGQQEQ 328
>U64843-12|AAL08039.1| 492|Caenorhabditis elegans Hypothetical
protein K06C4.9 protein.
Length = 492
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -2
Query: 478 FCQFLLNPLGRCAESL*HFMVWFVLFRVWFAVC 380
FC + P G A+ + +++ + WFAVC
Sbjct: 231 FCLVYIYPFGCMAKMIGQYIIVLIAVERWFAVC 263
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,074,669
Number of Sequences: 27780
Number of extensions: 329247
Number of successful extensions: 904
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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